Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_A15
         (534 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80447-8|AAB37812.3|  900|Caenorhabditis elegans Patched related...    28   3.7  
U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helical...    28   4.8  
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical...    28   4.8  
Z70307-7|CAA94336.2|  531|Caenorhabditis elegans Hypothetical pr...    27   6.4  

>U80447-8|AAB37812.3|  900|Caenorhabditis elegans Patched related
           family protein 10 protein.
          Length = 900

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 237 CVSTLCSLRIIDVNPMFFFC*MLKFYNKI 151
           C+ T+C+L +     + FFC +L +Y +I
Sbjct: 407 CIYTMCALLLTFAYQLTFFCAILVYYTRI 435


>U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helically
           twisted, animalsroll when moving protein 3, isoform b
           protein.
          Length = 1250

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 367 GNIYN*AVTICSGSFCDL 420
           GNIYN  V +CS  FC +
Sbjct: 688 GNIYNAQVQVCSDDFCSI 705


>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
           twisted, animalsroll when moving protein 3, isoform a
           protein.
          Length = 2456

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 367 GNIYN*AVTICSGSFCDL 420
           GNIYN  V +CS  FC +
Sbjct: 688 GNIYNAQVQVCSDDFCSI 705


>Z70307-7|CAA94336.2|  531|Caenorhabditis elegans Hypothetical
           protein C39E9.7 protein.
          Length = 531

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 224 FVLCALLMLIPCFFFVEC*NS 162
           FV+CA + +IP  FF  C N+
Sbjct: 163 FVMCAFISIIPALFFPICVNA 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,731,927
Number of Sequences: 27780
Number of extensions: 182837
Number of successful extensions: 266
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)