Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_A14
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    29   0.41 
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    29   0.54 
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    28   0.95 
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch...    27   1.7  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   2.9  
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    26   5.1  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    26   5.1  
SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   6.7  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    25   8.8  

>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
 Frame = +2

Query: 296 VYDENTGDHKTQHELSDGSVVRGGYSLIQPDGYIREVKYVADDLTGFNAVVKKFLPVNVE 475
           + DE T   KT  +LSD   +     L + + +I  ++ V DDL    +  K+ L  +V+
Sbjct: 93  ILDELTRSSKTHQKLSDDYSLDIAEKLKKLESHIEALRKVYDDLYKKFSSEKETLLNSVK 152

Query: 476 K-KIEHHEKSHPDPPCHEVKNEQLKVETKTEHS 571
           + K+ +HE +  D      KN++ + E KT+ +
Sbjct: 153 RAKVSYHE-ACDDLESARQKNDKYR-EQKTQRN 183


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
 Frame = +2

Query: 527 VKNEQLKVET---KTEHSESHHAPIV 595
           VK+E L+ ET   KTEH++S+H P V
Sbjct: 129 VKDEGLRTETIVKKTEHADSNHQPAV 154


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = -1

Query: 247  YWNTGLICYYICSGRGY*LPRIYTGRSTWRD*IWYY*SXQGLQIFGLVVILLRRLMERHI 68
            +W T  I  Y+    GY  P  Y GR+ W   +W       +Q  G+ +ILL+ L  RH+
Sbjct: 2280 FWATSNIGLYL-PWAGYSGP--YLGRTLW---LWLG-VLDAIQSVGIGMILLQTLTRRHV 2332

Query: 67   VS 62
             S
Sbjct: 2333 AS 2334


>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 22/72 (30%), Positives = 30/72 (41%)
 Frame = +2

Query: 281 EYSYLVYDENTGDHKTQHELSDGSVVRGGYSLIQPDGYIREVKYVADDLTGFNAVVKKFL 460
           +YSYL+    TG    Q      +V+ G + L Q    I E K V  D  G     KK +
Sbjct: 245 DYSYLLAMYGTGSELCQGFCRSSAVMGGTFMLGQAIDKIDESKIVLKD--GSTLSAKKIV 302

Query: 461 PVNVEKKIEHHE 496
               E K+ H +
Sbjct: 303 SSVDEGKLPHQQ 314


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/43 (32%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
 Frame = +2

Query: 488 HHEKSH--PDPPCHEVKNEQLKVETKTEHSESHHAPIVXEHHE 610
           HHE     P PP H    E +       H    H P    HHE
Sbjct: 200 HHEPGEHMPPPPMHHKPGEHMP-PPPMHHEPGEHMPPPPMHHE 241



 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/43 (30%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
 Frame = +2

Query: 488 HHEKSH--PDPPCHEVKNEQLKVETKTEHSESHHAPIVXEHHE 610
           HHE     P PP H    E +           H  P   +HHE
Sbjct: 304 HHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPFKHHE 346



 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = +2

Query: 485 EHHEKSHPDPPCHEVKNEQLKVETKTEHSESHHAPIVXEHHE 610
           +HHE    + P H    E  +     +  E H  P   EHH+
Sbjct: 343 KHHELEEHEGPEHHRGPEDKEHHKGPKDKEHHKGPKDKEHHK 384


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 9/94 (9%)
 Frame = +2

Query: 293 LVYDENTGDHKTQH-ELSDGSVVR---GGYSLIQPDGYIREVKYVADDLTGFNAVVKKFL 460
           L+Y    G    Q   LSD +++    G Y +I  +  I E+  V          +  F 
Sbjct: 153 LIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEIYNVGSHFKEVTKFLWPFT 212

Query: 461 --PVN---VEKKIEHHEKSHPDPPCHEVKNEQLK 547
             PV    +EKK++H  +      C E  NE +K
Sbjct: 213 LTPVKHSLMEKKVKHFNEGRKAGYCGEEINELIK 246


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 488 HHEKSHPDPPCHEVKNEQLKVETKTEHSESH 580
           HH  SH D P    + +Q  V + +E  + H
Sbjct: 307 HHHHSHDDDPSSPAEKKQNHVPSPSEKIQDH 337


>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +2

Query: 455 FLPVNVEKKIEHHEKSHPDPPCHEVKNEQLKVETKTE-HSESH 580
           FL  + E  +      HP PP H   +  +KV  K++ H ++H
Sbjct: 73  FLASSCEITVRLSSGGHPSPPVHIYMSALIKVCKKSKPHLQTH 115


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +2

Query: 395 IREVKYVADDLTGFNAVVKKFLPVNVEKKIEHHEKSH 505
           + +V    DD T         LPV   K + H EKSH
Sbjct: 297 LSKVTVTPDDSTSIIRGFDPRLPVLSTKNVSHEEKSH 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,306,548
Number of Sequences: 5004
Number of extensions: 44511
Number of successful extensions: 95
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)