Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_A13
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    28   2.0  
SPAC3G6.03c |||Maf-like protein|Schizosaccharomyces pombe|chr 1|...    27   4.6  
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    26   6.1  
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    26   6.1  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    26   6.1  

>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/68 (22%), Positives = 30/68 (44%)
 Frame = +1

Query: 217 TETVSVYCFIVHSFLRSHIRNYNSKKVAEDGVDVILWIEDPRIADEEVISKPPESINAIK 396
           +E + + C+  H+FL + + +Y      E  ++  L +   R  +   +     S N + 
Sbjct: 141 SEVLGISCYFEHNFLNASVPSYRIDYHLERLINFGLKVAVVRQTETAALKSTSSSRNTLF 200

Query: 397 DWRVTTIL 420
           D RV  +L
Sbjct: 201 DRRVARVL 208


>SPAC3G6.03c |||Maf-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/57 (22%), Positives = 27/57 (47%)
 Frame = +1

Query: 202 EDLEITETVSVYCFIVHSFLRSHIRNYNSKKVAEDGVDVILWIEDPRIADEEVISKP 372
           EDL  +  ++ + +   + ++  I  Y      ED  D+++  +   I D E++ KP
Sbjct: 57  EDLNKSMYITPWEYAADTSVQKAIAVYEKLAAEEDSPDIVVSADTILILDSEIMEKP 113


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 733 SNNSIDSPKCIYNCNLYL 786
           S N +++ +C+YNC +YL
Sbjct: 158 SRNHMEALECVYNCFIYL 175


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 224 QFRCTVSSFTRSSGATYETTTVKKWPKTASM*SYGLKTPGLQMKKLSV 367
           Q   T  +     GAT  TT +K +PK   + +      G Q+KKLS+
Sbjct: 495 QMEYTCEACKSKLGAT-TTTAMKSFPKVLILQANRFDLQGYQVKKLSI 541


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
 Frame = -2

Query: 549 FIVNIVQNLFTVH----LIICHSLSAVQYDLALSILGHVQPHASDRIQYCSHTPVFYGIN 382
           F+ + V NLF  +     +  H LSA++   ALSI   V     +    C  T  FY + 
Sbjct: 205 FLNDRVINLFLFYEKFSYLFTHLLSAIKSRDALSIPSLVLSLQEELFNLCQQTGTFYLLQ 264

Query: 381 GFRGLTDNFFICNPGVFNP*DHIDAVFGHFFTVVV 277
               L  NF   NP       H D +  +F  + V
Sbjct: 265 --HNLLQNFEFENPIKL----HFDKIIPYFSRLTV 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,331,732
Number of Sequences: 5004
Number of extensions: 65951
Number of successful extensions: 186
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)