Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_A13
         (871 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56965-10|AAB52670.1| 1041|Caenorhabditis elegans Nicotinamide n...    30   2.5  
Z72510-3|CAA96653.1|  366|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U34596-1|AAA97605.1|  570|Caenorhabditis elegans SMA-4 protein.        28   10.0 
U00066-6|ABC71810.1|  189|Caenorhabditis elegans Small protein 4...    28   10.0 
U00066-5|AAA50739.2|  565|Caenorhabditis elegans Small protein 4...    28   10.0 

>U56965-10|AAB52670.1| 1041|Caenorhabditis elegans Nicotinamide
           nucleotide transhydrogenaseprotein 1 protein.
          Length = 1041

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -1

Query: 148 VSGTNRAGQVCCSLHCIMPQVE*E*LKKPVTF*SWCSYDGGMIVTHR 8
           +SGT  AG +C     +MPQ   + +    TF S  +  GG +VT R
Sbjct: 488 ISGTTAAGALCLMGGGLMPQNSAQTMALLATFISSVNIGGGFLVTKR 534


>Z72510-3|CAA96653.1|  366|Caenorhabditis elegans Hypothetical
           protein F53B7.4 protein.
          Length = 366

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 766 YNCNLYLSKSKIRCYAINICH*TDSNCQVIT 858
           YNC+ Y   S + C  ++ C   +S C  IT
Sbjct: 145 YNCSKYCFSSSLECDGLDTCGEDESTCAFIT 175


>U34596-1|AAA97605.1|  570|Caenorhabditis elegans SMA-4 protein.
          Length = 570

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +2

Query: 197 ESKI*KLRRQFRCTVS-SFTRSSGATYETTTVKKWP 301
           +S + ++RR F CT++ SF ++ G  Y+  T+K+ P
Sbjct: 509 DSGVDRMRRDF-CTIAISFVKAWGDVYQRKTIKETP 543


>U00066-6|ABC71810.1|  189|Caenorhabditis elegans Small protein 4,
           isoform b protein.
          Length = 189

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +2

Query: 197 ESKI*KLRRQFRCTVS-SFTRSSGATYETTTVKKWP 301
           +S + ++RR F CT++ SF ++ G  Y+  T+K+ P
Sbjct: 128 DSGVDRMRRDF-CTIAISFVKAWGDVYQRKTIKETP 162


>U00066-5|AAA50739.2|  565|Caenorhabditis elegans Small protein 4,
           isoform a protein.
          Length = 565

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +2

Query: 197 ESKI*KLRRQFRCTVS-SFTRSSGATYETTTVKKWP 301
           +S + ++RR F CT++ SF ++ G  Y+  T+K+ P
Sbjct: 504 DSGVDRMRRDF-CTIAISFVKAWGDVYQRKTIKETP 538


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,544,559
Number of Sequences: 27780
Number of extensions: 373445
Number of successful extensions: 984
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)