Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_A13
         (871 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   1.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   3.7  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   4.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 393  KRLACDYNTGSDHSHEAVRDQECSMQDHTVQQR 491
            K+ ACD     DHS +  + Q+   Q    QQ+
Sbjct: 1483 KKSACDSKLIVDHSSQKTQQQQPQQQQQQQQQQ 1515


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 221 SVISRSSILSQHCSERSLRVGSSNGI 144
           + +  SSI+S   S R  R+G  NG+
Sbjct: 383 AAVQSSSIVSSPDSARHQRIGGCNGL 408


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 725 VQQLTIYCLFFWLNLIGLV 669
           +Q LT+ CL FW  ++  +
Sbjct: 385 IQCLTVVCLAFWSFIVSTI 403


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,688
Number of Sequences: 438
Number of extensions: 4817
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)