Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_A11
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...   204   8e-54
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...   204   8e-54
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    49   5e-07
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    25   6.4  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   8.5  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    25   8.5  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  204 bits (498), Expect = 8e-54
 Identities = 94/140 (67%), Positives = 117/140 (83%)
 Frame = +1

Query: 73  IQAVQVFGRKXTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 252
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 253 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRR 432
           DIRV V GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK E+K  L+ YDR+LLVADPRR
Sbjct: 61  DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRR 120

Query: 433 CEPKKFGGPGARARYQKSYR 492
            EPKKFGG GARAR QKSYR
Sbjct: 121 MEPKKFGGHGARARQQKSYR 140


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score =  204 bits (498), Expect = 8e-54
 Identities = 94/140 (67%), Positives = 117/140 (83%)
 Frame = +1

Query: 73  IQAVQVFGRKXTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 252
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 253 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRR 432
           DIRV V GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK E+K  L+ YDR+LLVADPRR
Sbjct: 61  DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRR 120

Query: 433 CEPKKFGGPGARARYQKSYR 492
            EPKKFGG GARAR QKSYR
Sbjct: 121 MEPKKFGGHGARARQQKSYR 140


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 49.2 bits (112), Expect = 5e-07
 Identities = 40/128 (31%), Positives = 59/128 (46%)
 Frame = +1

Query: 94  GRKXTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 273
           G++ ++ A      G G   VNG P D+   R++  K      L    + +  ++  TV 
Sbjct: 12  GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVH 70

Query: 274 GGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFG 453
           GGG   Q  A+  AISK+LI      + E S K+     V  D   ++ D R+ E KK G
Sbjct: 71  GGGPTGQSGAVHAAISKSLI------LQEPSLKQ-----VIKDTHCVLNDKRKVERKKTG 119

Query: 454 GPGARARY 477
            P AR +Y
Sbjct: 120 QPKARKKY 127


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
            Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 213  TYPFARQGKILYGRHQSDSQGWWSCSTSLRYQTSYFKGPDCLLSEI 350
            T  F+R GKI++   +S   G W   TS + Q      P+C   E+
Sbjct: 984  TISFSRSGKIIFKSTRSKLHGIWH-ETSYKMQ-EIRDNPECARQEM 1027


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 312 LSDSVNLCYMTTTLDCHSDV-DHREFFLAEQ 223
           LS+  N CYM + L C +   + R+FF +++
Sbjct: 313 LSNLGNTCYMNSALQCLTHTRELRDFFTSDE 343


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 473 DTRNLTVKPSTKPSGGIVAASCCH 544
           D  N+ VKP+  P+  +    CCH
Sbjct: 566 DRFNVIVKPALNPAERMTVRICCH 589


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,403,354
Number of Sequences: 5004
Number of extensions: 46097
Number of successful extensions: 123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)