Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_A08
(850 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0702 - 5243064-5243159,5243280-5243331,5243453-5243526,524... 263 1e-70
11_05_0092 + 18984571-18984621,18984717-18984779,18984957-189849... 261 6e-70
02_02_0178 + 7490447-7490659,7490996-7491112,7491337-7491517,749... 44 1e-04
05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998... 32 0.66
06_03_0159 - 17358853-17360781 29 3.5
07_01_0101 - 752935-753223,753311-753408,753674-753764,753844-75... 29 6.2
04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784 29 6.2
04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093 29 6.2
07_03_0535 - 19198130-19198139,19199901-19199995,19200095-192001... 28 8.2
04_03_0543 + 16955440-16955518,16956623-16956726,16957456-169576... 28 8.2
03_06_0220 + 32452831-32452944,32453618-32453911,32454416-324545... 28 8.2
02_04_0621 - 24502383-24502476,24502532-24504015,24504125-245041... 28 8.2
02_04_0607 - 24302582-24303075,24303150-24304197 28 8.2
>02_01_0702 -
5243064-5243159,5243280-5243331,5243453-5243526,
5243633-5243683,5243840-5243899,5244131-5244232,
5244416-5244502,5244759-5244803,5245241-5245283,
5245371-5245499,5245599-5245676,5245762-5245811,
5246026-5246108,5246780-5246843,5246953-5247066,
5247558-5247623,5247713-5247778,5248405-5248446,
5248590-5248652,5248744-5248794
Length = 471
Score = 263 bits (645), Expect = 1e-70
Identities = 118/220 (53%), Positives = 165/220 (75%)
Frame = +2
Query: 188 SAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEVTVDMMYGGMRGIKGLVWETSVLD 367
SA +LKS LQE IP++Q+++++ + +HG ++G +TVDM+ GGMRG+ G++WETS+LD
Sbjct: 34 SASDLDLKSQLQELIPEQQDRLKKLKSEHGKVQLGNITVDMVLGGMRGMTGMLWETSLLD 93
Query: 368 ADEGIRFRGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTGDIPTEAQAKALSKEWAARAE 547
DEGIRFRGLSIPECQ+ LP A EPLPEGL WLL+TG +PT+ Q ALSKE A+R+
Sbjct: 94 PDEGIRFRGLSIPECQKVLPTAVKDGEPLPEGLLWLLLTGKVPTKEQVDALSKELASRSS 153
Query: 548 LPAHVVTMLNNMPGKLHPMSQFSAAVTALNSESKFAKAYSEGVHKSKYWEYVYEDTMNLI 727
+P HV ++ +P HPM+QF+ V AL ES+F KAY +G+ KSK+WE YED +NLI
Sbjct: 154 VPGHVYEAIDALPVTAHPMTQFTTGVMALQVESEFQKAYDKGMSKSKFWEPTYEDCLNLI 213
Query: 728 AKLPVIAATIYRNVYRDGKGIGAIDDNKDWSANYCNMLGF 847
A+LP +A+ +YR +++ GK I A D+ D++AN+ +MLGF
Sbjct: 214 ARLPAVASYVYRRIFKGGKTIAA-DNALDYAANFSHMLGF 252
>11_05_0092 +
18984571-18984621,18984717-18984779,18984957-18984998,
18985560-18985625,18985728-18985793,18986277-18986390,
18986592-18986655,18987399-18987481,18987703-18987752,
18987844-18987921,18988020-18988148,18988244-18988286,
18988987-18989073,18989217-18989318,18989556-18989663,
18989750-18989800,18989886-18989959,18990079-18990130,
18990216-18990311
Length = 472
Score = 261 bits (639), Expect = 6e-70
Identities = 117/220 (53%), Positives = 164/220 (74%)
Frame = +2
Query: 188 SAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEVTVDMMYGGMRGIKGLVWETSVLD 367
S +LKS LQE IP++Q+++++ + +HG ++G +TVDM+ GGMRG+ G++WETS+LD
Sbjct: 34 SPSDLDLKSQLQELIPEQQDRLKKLKSEHGKVQLGNITVDMVLGGMRGMIGMLWETSLLD 93
Query: 368 ADEGIRFRGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTGDIPTEAQAKALSKEWAARAE 547
+EGIRFRGLSIPECQ+ LP A G EPLPEGL WLL+TG +PT+ Q ALSKE R+
Sbjct: 94 PEEGIRFRGLSIPECQKVLPTAIKGGEPLPEGLLWLLLTGKVPTKEQVDALSKELVTRSS 153
Query: 548 LPAHVVTMLNNMPGKLHPMSQFSAAVTALNSESKFAKAYSEGVHKSKYWEYVYEDTMNLI 727
+P HV ++ +P HPM+QF+ V AL ES+F KAY +G+ KSK+WE YED +NLI
Sbjct: 154 VPGHVYKAIDALPVTAHPMTQFTTGVMALQVESEFQKAYDKGMPKSKFWEPTYEDCLNLI 213
Query: 728 AKLPVIAATIYRNVYRDGKGIGAIDDNKDWSANYCNMLGF 847
A+LP +A+ +YR +++DGK I A D+ D++AN+ +MLGF
Sbjct: 214 ARLPPVASYVYRRIFKDGKTIAA-DNALDYAANFSHMLGF 252
>02_02_0178 +
7490447-7490659,7490996-7491112,7491337-7491517,
7491594-7491679,7491785-7491889,7492059-7492121,
7492404-7492513,7492644-7492763,7492833-7492908,
7493254-7493327,7493474-7493594,7495559-7495656,
7495735-7495858,7496373-7496504
Length = 539
Score = 44.4 bits (100), Expect = 1e-04
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 1/134 (0%)
Frame = +2
Query: 362 LDADEGI-RFRGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTGDIPTEAQAKALSKEWAA 538
+D DEGI R+RG I E L ++ E + +LL+ G +PT++Q +
Sbjct: 140 IDGDEGILRYRGYPIEE----LAESSSFVE-----VAYLLMYGSLPTQSQLAGWEFAISQ 190
Query: 539 RAELPAHVVTMLNNMPGKLHPMSQFSAAVTALNSESKFAKAYSEGVHKSKYWEYVYEDTM 718
+ +P ++ ++ MP HPM ++A++ L+ A G K + + +
Sbjct: 191 HSAVPQGLLDIIQAMPHDAHPMGALASAMSTLSVFHPDANPALRGQDLYKSKQVRDKQIV 250
Query: 719 NLIAKLPVIAATIY 760
++ K P IAA Y
Sbjct: 251 RVLGKAPTIAAAAY 264
>05_05_0030 - 21698625-21698752,21699589-21699627,21699708-21699822,
21699927-21699992,21701064-21701203,21701424-21701473,
21701608-21702045,21702757-21702839,21702941-21702977,
21703366-21703457,21703531-21703615,21703950-21704029,
21704049-21704105,21704350-21704747,21706322-21707223,
21707331-21707421,21708123-21710273,21710375-21710813,
21711180-21711299
Length = 1836
Score = 31.9 bits (69), Expect = 0.66
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +3
Query: 594 CIPCRSSRLPSPHSTVNLNSLKPTQRACTNPSI-GSTCT 707
C R+SR SPH+T L + + C NP G C+
Sbjct: 1660 CSQLRTSRFTSPHATDELKDTREAPKPCCNPQTEGGLCS 1698
>06_03_0159 - 17358853-17360781
Length = 642
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -2
Query: 291 PTLVEPCFFRNSRIFSCSLG--IFSWRILFKFVCSALRPR 178
P L+ P F R+ R F L + S+ +L K VCS+L PR
Sbjct: 144 PHLLPPFFSRSLRRFPGRLAPTLLSFNLLLKCVCSSLVPR 183
>07_01_0101 -
752935-753223,753311-753408,753674-753764,753844-753882,
754019-754110,754535-754634,754742-754828,754949-755250,
756036-756242,756319-756405,756978-757058,757257-757365,
758037-758093,758188-758258,758414-758521,758874-758974,
759111-759177,759434-759535,759618-759662,759916-760511,
761956-762065,762165-762280
Length = 984
Score = 28.7 bits (61), Expect = 6.2
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -3
Query: 611 TATWDAVCRAYCS-TLSLREP 552
+A W+A+C AYCS T R+P
Sbjct: 852 SAAWEAICEAYCSDTNPTRDP 872
>04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784
Length = 1035
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +2
Query: 530 WAARAELPAHVVTMLNNMPGKLHP--MSQFSAAVTALNSESKFAKAYSEGVHKSKYWEYV 703
W E A + + + KLHP +++ ++ LN + Y VH S YWE+
Sbjct: 209 WDILCEEAAEIASNTCSGVAKLHPTTIAKCWLYISKLNFVGRDIIDYDWAVHASNYWEWE 268
Query: 704 YEDTM 718
D +
Sbjct: 269 IADAL 273
>04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093
Length = 1040
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +2
Query: 530 WAARAELPAHVVTMLNNMPGKLHP--MSQFSAAVTALNSESKFAKAYSEGVHKSKYWEYV 703
W E A + + + KLHP +++ ++ LN + Y VH S YWE+
Sbjct: 209 WDILCEEAAEIASNTCSGVAKLHPTTIAKCWLYISKLNFVGRDIIDYDWAVHASNYWEWE 268
Query: 704 YEDTM 718
D +
Sbjct: 269 IADAL 273
>07_03_0535 -
19198130-19198139,19199901-19199995,19200095-19200154,
19200241-19200349,19200438-19200604,19200694-19200813,
19200901-19200987,19201068-19201196,19201284-19201362,
19201451-19201530,19201646-19201726,19201812-19201874,
19201963-19202139,19202381-19202476,19202610-19202729,
19202825-19202933,19203016-19203235,19203320-19203405,
19203491-19203552,19203649-19203685,19203790-19203848,
19203952-19204037,19204142-19204313
Length = 767
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 381 IPSSASSTEVSQTRPLIPRMPPYIISTVTSPT 286
+PS+A S +V+ + P I R PP + + T PT
Sbjct: 162 VPSNAKSADVASSTPKIQRPPP-VKAVTTVPT 192
>04_03_0543 +
16955440-16955518,16956623-16956726,16957456-16957655,
16958554-16958654,16959408-16959603,16960243-16960324,
16960402-16960668,16960790-16960917,16961285-16961465
Length = 445
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 476 LVTGDIPTEAQAKALSKEWAARAELPAHVVTMLNN-MPGKLHPMSQF 613
L+ GD+ A A++ +W RA++ HV + N +P L S F
Sbjct: 254 LIPGDMVINAMMAAINSQWNKRAQVIYHVTSAHQNPLPVSLIEESMF 300
>03_06_0220 +
32452831-32452944,32453618-32453911,32454416-32454503,
32454596-32454717,32454985-32455142,32455201-32455273,
32455552-32455640,32455753-32455858,32455967-32456179,
32456726-32456920,32457051-32457128,32457209-32457523
Length = 614
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/56 (23%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -2
Query: 177 SRTVAVGHAFCNSTSLEDVILNRAIFKA--AERKLPHKSRQLARDRSHTQVTEKKN 16
++ +A F N + + ++ A+ + A+R+ HK+ RD++H +V++ K+
Sbjct: 24 NKKIAANEVFYNPVQVHNRDMSVALLRTFIAKREEEHKAMMDKRDKAHNKVSQSKS 79
>02_04_0621 -
24502383-24502476,24502532-24504015,24504125-24504177,
24504871-24504984,24505068-24505202,24505960-24506055,
24506692-24506827
Length = 703
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/43 (41%), Positives = 20/43 (46%)
Frame = -2
Query: 402 MDRPRKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEP 274
MDR R+R P S S S P PR P + V P L EP
Sbjct: 1 MDRLRRRNPKSVPSGSSSMKPPRPPRGPSFQAPAVPRP-LPEP 42
>02_04_0607 - 24302582-24303075,24303150-24304197
Length = 513
Score = 28.3 bits (60), Expect = 8.2
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = +1
Query: 298 HS*YDVRWHAWNQRSGLGNLCAGCR*RNPFPWSIHP*VPTATAQG*GW 441
H DVR H R G G AG + PF W+ HP + T A+ GW
Sbjct: 85 HGHVDVRHH---HRGGAG---AGGAQQGPFQWADHPRLVTEAAEN-GW 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,504,362
Number of Sequences: 37544
Number of extensions: 475668
Number of successful extensions: 1498
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1496
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -