Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_A08
(850 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z30423-2|CAA83004.1| 468|Caenorhabditis elegans Hypothetical pr... 322 1e-88
AC024799-5|AAO25979.1| 474|Caenorhabditis elegans Hypothetical ... 31 1.0
AC024799-4|AAK72318.1| 536|Caenorhabditis elegans Hypothetical ... 31 1.0
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 31 1.4
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 30 1.8
U29381-6|AAA68754.1| 237|Caenorhabditis elegans Hypothetical pr... 30 2.4
AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical ... 29 4.2
Z68318-4|CAA92693.2| 1170|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z69787-10|CAH65466.1| 398|Caenorhabditis elegans Hypothetical p... 28 7.3
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 28 7.3
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 28 7.3
AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein. 28 7.3
U39647-7|AAP31441.1| 544|Caenorhabditis elegans Twik family of ... 28 9.6
U39647-5|AAM51531.1| 576|Caenorhabditis elegans Twik family of ... 28 9.6
U39647-4|AAM51532.1| 562|Caenorhabditis elegans Twik family of ... 28 9.6
U00046-4|AAC47043.2| 308|Caenorhabditis elegans Serpentine rece... 28 9.6
U00031-9|AAK18871.1| 470|Caenorhabditis elegans Hypothetical pr... 28 9.6
AF083651-1|AAC32862.1| 562|Caenorhabditis elegans putative pota... 28 9.6
AF083648-1|AAC32859.1| 544|Caenorhabditis elegans putative pota... 28 9.6
AF083647-1|AAC32858.1| 576|Caenorhabditis elegans putative pota... 28 9.6
>Z30423-2|CAA83004.1| 468|Caenorhabditis elegans Hypothetical
protein T20G5.2 protein.
Length = 468
Score = 322 bits (792), Expect = 1e-88
Identities = 148/249 (59%), Positives = 189/249 (75%), Gaps = 1/249 (0%)
Frame = +2
Query: 104 MALFRITSSRLVELQKACPTATVLLRGLSAE-QTNLKSILQEKIPKEQEKIREFRKKHGS 280
MA+ R+ + ++ + + P +T SAE TNLK +L +KIP K++ FR +HGS
Sbjct: 6 MAIRRLITKGVIPVCQVAPLST------SAEGSTNLKEVLSKKIPAHNAKVKSFRTEHGS 59
Query: 281 TKVGEVTVDMMYGGMRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPE 460
T V V +DM+YGGMR +KG+V ETSVLD +EGIRFRG SIPECQ+ LPKAKGGEEPLPE
Sbjct: 60 TVVQNVNIDMIYGGMRSMKGMVTETSVLDPEEGIRFRGYSIPECQKLLPKAKGGEEPLPE 119
Query: 461 GLFWLLVTGDIPTEAQAKALSKEWAARAELPAHVVTMLNNMPGKLHPMSQFSAAVTALNS 640
++WLL TGD+P+EAQ A++KEW ARA+LP HVV ML+N P LHPM+QF AA+ ALN+
Sbjct: 120 AIWWLLCTGDVPSEAQTAAITKEWNARADLPTHVVRMLDNFPDNLHPMAQFIAAIAALNN 179
Query: 641 ESKFAKAYSEGVHKSKYWEYVYEDTMNLIAKLPVIAATIYRNVYRDGKGIGAIDDNKDWS 820
ESKFA AY+ GV K+ YWEY YED+M+L+AKLP +AA IYRN+YRDG + ID KDWS
Sbjct: 180 ESKFAGAYARGVAKASYWEYAYEDSMDLLAKLPTVAAIIYRNLYRDGSAVSVIDPKKDWS 239
Query: 821 ANYCNMLGF 847
AN+ +MLG+
Sbjct: 240 ANFSSMLGY 248
>AC024799-5|AAO25979.1| 474|Caenorhabditis elegans Hypothetical
protein Y49C4A.8b protein.
Length = 474
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/55 (32%), Positives = 31/55 (56%)
Frame = +2
Query: 107 ALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKK 271
++F I S+ + + TV + G+S NLK I ++K+ K+ E++ E RKK
Sbjct: 251 SIFFINSNPFFDFPRPVLQKTVPIGGISV---NLKWIKEQKLTKDWEEVLEMRKK 302
>AC024799-4|AAK72318.1| 536|Caenorhabditis elegans Hypothetical
protein Y49C4A.8a protein.
Length = 536
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/55 (32%), Positives = 31/55 (56%)
Frame = +2
Query: 107 ALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKK 271
++F I S+ + + TV + G+S NLK I ++K+ K+ E++ E RKK
Sbjct: 251 SIFFINSNPFFDFPRPVLQKTVPIGGISV---NLKWIKEQKLTKDWEEVLEMRKK 302
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 158 PTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGE 295
PT+T+ L L + NL S+ E+ K +EKI + R++ + + E
Sbjct: 2424 PTSTIDLNMLQGIEDNLNSLPAEESDKIREKINDLRRRKQESDLAE 2469
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 158 PTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKK 271
PT+T+ L L + NL S+ E+ K +EKI + R++
Sbjct: 2482 PTSTIDLNMLQGIEDNLNSLPAEESDKIREKINDLRRR 2519
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -2
Query: 393 PRKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEP 274
P + P ST Q RP PR PY+ + T+ +EP
Sbjct: 226 PARPAPYIEPSTAKPQPRPQPPRTRPYVAPSTTTQRYIEP 265
>U29381-6|AAA68754.1| 237|Caenorhabditis elegans Hypothetical
protein F35D11.8 protein.
Length = 237
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +2
Query: 581 MPGKLHPMSQFSAAVTALNSESKFAKAYSEGVHKSKYWEYVYE----DTMNLIAKLPVIA 748
+ G+L P +F+ + +F + EG+ KY ++Y+ DT + KL V A
Sbjct: 107 LDGQLSPRCKFAIYKGQVKGAKRFNQTSEEGICNIKYELFIYDDINTDTSFIRTKLGVSA 166
Query: 749 ATIYRNVYRD 778
+ R+V D
Sbjct: 167 GSNVRSVQAD 176
>AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical
protein Y87G2A.5 protein.
Length = 1050
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +2
Query: 431 AKGGEEPLPEGLFWLLVTGDIPTEAQAKALSKEWAARAEL 550
A G E+PLPE +W V+ EA AKA K AE+
Sbjct: 521 ADGREQPLPEENYW--VSARTEQEALAKAAQKFQVPEAEI 558
>Z68318-4|CAA92693.2| 1170|Caenorhabditis elegans Hypothetical
protein T21B10.3 protein.
Length = 1170
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 420 CCWHSG-MDRPRKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEPCFFRN 259
C W S + P+K++PS T Q ++ P +STV+ C+FR+
Sbjct: 585 CSWFSSSLQNPKKQVPSGVYKTIAEQHLDEFEQIKPEEVSTVSD------CYFRS 633
>Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical protein
T10G3.5b protein.
Length = 1203
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/69 (23%), Positives = 35/69 (50%)
Frame = +2
Query: 107 ALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTK 286
+L ++ SR+ EL+ ++ L A+ +++I QEK+ + Q+ EF + +
Sbjct: 1019 SLEKVNHSRIEELESRLTQRERVVESLEADLAAVRNIEQEKLDELQKLKEEFDELKKAET 1078
Query: 287 VGEVTVDMM 313
+ + DM+
Sbjct: 1079 MWQAEKDML 1087
>Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical protein
T10G3.5a protein.
Length = 1205
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/69 (23%), Positives = 35/69 (50%)
Frame = +2
Query: 107 ALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTK 286
+L ++ SR+ EL+ ++ L A+ +++I QEK+ + Q+ EF + +
Sbjct: 1021 SLEKVNHSRIEELESRLTQRERVVESLEADLAAVRNIEQEKLDELQKLKEEFDELKKAET 1080
Query: 287 VGEVTVDMM 313
+ + DM+
Sbjct: 1081 MWQAEKDML 1089
>Z69787-10|CAH65466.1| 398|Caenorhabditis elegans Hypothetical
protein C44C10.11 protein.
Length = 398
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 185 LSAEQTNLKSILQEKIPKEQEKIREFRKKH 274
L+ E NLK L++K E + I E +KKH
Sbjct: 318 LTEENHNLKEQLKQKTDAETKMIAEMKKKH 347
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 348 QTRPLIPRMPPYIISTVTSPTLVEPCFFRNSR 253
QTRP P++PP I+ T V+P FF+ +R
Sbjct: 365 QTRP--PQLPPVQITQPPIQTPVQPIFFQTTR 394
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 348 QTRPLIPRMPPYIISTVTSPTLVEPCFFRNSR 253
QTRP P++PP I+ T V+P FF+ +R
Sbjct: 462 QTRP--PQLPPVQITQPPIQTPVQPIFFQTTR 491
>AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.
Length = 1205
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/69 (23%), Positives = 35/69 (50%)
Frame = +2
Query: 107 ALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTK 286
+L ++ SR+ EL+ ++ L A+ +++I QEK+ + Q+ EF + +
Sbjct: 1021 SLEKVNHSRIEELESRLTQRERVVESLEADLAAVRNIEQEKLDELQKLKEEFDELKKAET 1080
Query: 287 VGEVTVDMM 313
+ + DM+
Sbjct: 1081 MWQAEKDML 1089
>U39647-7|AAP31441.1| 544|Caenorhabditis elegans Twik family of
potassium channelsprotein 17, isoform e protein.
Length = 544
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +2
Query: 584 PGKLHPMSQFSAAVTALNS--ESKFAKAYSEGVHKSKYWEYVYEDTMNLIAKLP-VIAAT 754
P P ++ SAA++ N+ +FA AY E + + K+ EY + + + + P V+
Sbjct: 69 PPSKPPSNRNSAALSRHNTVRSHQFAFAYDENIGRVKWEEYNRREGIEDVPEQPIVVRVP 128
Query: 755 IYRNVYR 775
I+R + +
Sbjct: 129 IWRRILK 135
>U39647-5|AAM51531.1| 576|Caenorhabditis elegans Twik family of
potassium channelsprotein 17, isoform c protein.
Length = 576
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +2
Query: 584 PGKLHPMSQFSAAVTALNS--ESKFAKAYSEGVHKSKYWEYVYEDTMNLIAKLP-VIAAT 754
P P ++ SAA++ N+ +FA AY E + + K+ EY + + + + P V+
Sbjct: 69 PPSKPPSNRNSAALSRHNTVRSHQFAFAYDENIGRVKWEEYNRREGIEDVPEQPIVVRVP 128
Query: 755 IYRNVYR 775
I+R + +
Sbjct: 129 IWRRILK 135
>U39647-4|AAM51532.1| 562|Caenorhabditis elegans Twik family of
potassium channelsprotein 17, isoform d protein.
Length = 562
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +2
Query: 584 PGKLHPMSQFSAAVTALNS--ESKFAKAYSEGVHKSKYWEYVYEDTMNLIAKLP-VIAAT 754
P P ++ SAA++ N+ +FA AY E + + K+ EY + + + + P V+
Sbjct: 69 PPSKPPSNRNSAALSRHNTVRSHQFAFAYDENIGRVKWEEYNRREGIEDVPEQPIVVRVP 128
Query: 755 IYRNVYR 775
I+R + +
Sbjct: 129 IWRRILK 135
>U00046-4|AAC47043.2| 308|Caenorhabditis elegans Serpentine
receptor, class v protein1 protein.
Length = 308
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -2
Query: 180 RSRTVAVGHAFCNSTSLEDVILNRAIFKAAERKLPHKSRQLARDRSHTQVTE 25
R+ V CNS++L + LNR I KA R L S Q ++H + +
Sbjct: 255 RTMWFVVNDVLCNSSALVLLALNRPIRKAFTRHLGVFSYQGVSTKNHNSLLQ 306
>U00031-9|AAK18871.1| 470|Caenorhabditis elegans Hypothetical
protein B0361.8 protein.
Length = 470
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -2
Query: 195 SALRPRSRTVAVGHAFCNSTSLEDVILNRAIFKAAERKLP-HK 70
S R +S+TVA H +CN+ + +L AI + ++K P HK
Sbjct: 34 SGFRRKSKTVAFFHPYCNAGGGGERVLWAAI-RTMQKKFPDHK 75
>AF083651-1|AAC32862.1| 562|Caenorhabditis elegans putative
potassium channel subunitn2P17m2-1 protein.
Length = 562
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +2
Query: 584 PGKLHPMSQFSAAVTALNS--ESKFAKAYSEGVHKSKYWEYVYEDTMNLIAKLP-VIAAT 754
P P ++ SAA++ N+ +FA AY E + + K+ EY + + + + P V+
Sbjct: 69 PPSKPPSNRNSAALSRHNTVRSHQFAFAYDENIGRVKWEEYNRREGIEDVPEQPIVVRVP 128
Query: 755 IYRNVYR 775
I+R + +
Sbjct: 129 IWRRILK 135
>AF083648-1|AAC32859.1| 544|Caenorhabditis elegans putative
potassium channel subunitn2P17m2-3 protein.
Length = 544
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +2
Query: 584 PGKLHPMSQFSAAVTALNS--ESKFAKAYSEGVHKSKYWEYVYEDTMNLIAKLP-VIAAT 754
P P ++ SAA++ N+ +FA AY E + + K+ EY + + + + P V+
Sbjct: 69 PPSKPPSNRNSAALSRHNTVRSHQFAFAYDENIGRVKWEEYNRREGIEDVPEQPIVVRVP 128
Query: 755 IYRNVYR 775
I+R + +
Sbjct: 129 IWRRILK 135
>AF083647-1|AAC32858.1| 576|Caenorhabditis elegans putative
potassium channel subunitn2P17m2-2 protein.
Length = 576
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +2
Query: 584 PGKLHPMSQFSAAVTALNS--ESKFAKAYSEGVHKSKYWEYVYEDTMNLIAKLP-VIAAT 754
P P ++ SAA++ N+ +FA AY E + + K+ EY + + + + P V+
Sbjct: 69 PPSKPPSNRNSAALSRHNTVRSHQFAFAYDENIGRVKWEEYNRREGIEDVPEQPIVVRVP 128
Query: 755 IYRNVYR 775
I+R + +
Sbjct: 129 IWRRILK 135
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,391,007
Number of Sequences: 27780
Number of extensions: 379591
Number of successful extensions: 1295
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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