Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_A08
         (850 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   2.7  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   4.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   4.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.2  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +2

Query: 722 LIAKLPVIAATIYRNVYRDGKGIGAIDDNKD 814
           L  KLP      +  +Y   KG   IDDN D
Sbjct: 248 LFRKLPFAGLHSHTIIYLSAKGHRPIDDNID 278


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 591 NCIPCRSSRLPSPHSTVNLNSLKPTQRA 674
           N  PC  +R+ SPH         P +RA
Sbjct: 368 NTAPCGDARIFSPHEENESVDKHPNRRA 395


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 721 VHRVFVHVLPIL 686
           V RVF+HVLP L
Sbjct: 341 VRRVFIHVLPRL 352


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 721 VHRVFVHVLPIL 686
           V RVF+H+LP L
Sbjct: 345 VKRVFIHILPRL 356


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 721 VHRVFVHVLPIL 686
           V RVF+H+LP L
Sbjct: 345 VKRVFIHILPRL 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,526
Number of Sequences: 438
Number of extensions: 4728
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)