Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_A06
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    30   0.43 
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    25   9.2  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   9.2  

>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = +2

Query: 176 EYSQNPQFKAHVINLMTSLNLAVNNLNQPEIVAAM 280
           EY  + +F+ H++++M S   + + + +PE++A M
Sbjct: 465 EYRLHEEFQPHILDMMDSSTSSPSYITEPELIALM 499


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 670 SLKNLRALNLPYVP*QILIQHKIHC 596
           SL+NL++L+  Y+P +I+  H I C
Sbjct: 588 SLRNLKSLSHSYLPIEIMKGHIIVC 612


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +1

Query: 4   PADDINSIEASCSYVVGDSHIMTSYNIT*RVNA*H*TIQHVS 129
           PAD   SI A   Y +GD H+    N   RVN     I+H+S
Sbjct: 785 PADSAGSICAVSGYALGDVHVQCD-NCGLRVNLDF--IKHIS 823


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,959,170
Number of Sequences: 5004
Number of extensions: 58664
Number of successful extensions: 147
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)