Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_A05
(805 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 283 2e-77
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 167 2e-42
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc... 68 1e-12
SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyc... 52 1e-07
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 35 0.016
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc... 29 0.77
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 28 1.8
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5... 27 3.1
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 5.5
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 26 7.2
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 26 7.2
SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ... 25 9.5
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 25 9.5
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 9.5
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 283 bits (695), Expect = 2e-77
Identities = 133/232 (57%), Positives = 184/232 (79%), Gaps = 2/232 (0%)
Frame = +2
Query: 116 SSAIYILAVKGKVLISRNYRGDVDLGVIDKFMPLLMEKEEE-GMLTPLLQTSECTFAYIK 292
+SAI++L +KGKV+ISR+YR D+ + V++KF+PL E EEE G TP L + YI
Sbjct: 2 ASAIFVLNLKGKVIISRDYRADIPMSVVEKFLPLKSEVEEEQGFSTPCLTHEGINYIYIH 61
Query: 293 TNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFG 472
N++Y+++ +K N++ + VFL K+ +V +YFKEL+EESIRDNFV++YELLDE++DFG
Sbjct: 62 HNDVYLLALSKMNSDAMEMLVFLRKMADVFIDYFKELQEESIRDNFVLVYELLDEIMDFG 121
Query: 473 YPQTTDSKILQEYITQEGHKLEMQPKIPMAVTNAVSWRSEGIKYRKNEVFLDVIESVNLL 652
+PQTT++KILQEYITQ + ++ P+A+TNA+SWRSEGI YRKNEVFLDVIESVNL+
Sbjct: 122 FPQTTETKILQEYITQTSNTVKKHAPPPIAMTNAISWRSEGIHYRKNEVFLDVIESVNLI 181
Query: 653 ANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFESTGRG-KSXSVEL 805
A ++G V++SEI+G ++++ YLSGMPELRLGLNDKVLFE+ GR K +VE+
Sbjct: 182 AAADGTVIQSEILGKVRLKCYLSGMPELRLGLNDKVLFEAAGRTIKGNTVEM 233
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 167 bits (406), Expect = 2e-42
Identities = 83/230 (36%), Positives = 133/230 (57%), Gaps = 13/230 (5%)
Frame = +2
Query: 119 SAIYILAVKGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEGMLTPLLQTSECTFAYIKTN 298
S ++I +KG LI + +R D+ V + F ++ + P++ T+ Y K
Sbjct: 3 SGLFIFNLKGDTLICKTFRHDLKKSVTEIFRVAILTNTD--YRHPIVSIGSSTYIYTKHE 60
Query: 299 NLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFGYP 478
+LY+V+ TK N N+ +V FL +++ +T YF +L E +++DN I+ELLDE+ID+G
Sbjct: 61 DLYVVAITKGNPNVMIVLEFLESLIQDLTHYFGKLNENTVKDNVSFIFELLDEMIDYGII 120
Query: 479 QTTDSKILQEYIT-------------QEGHKLEMQPKIPMAVTNAVSWRSEGIKYRKNEV 619
QTT+ L ++ + H ++ + +V WR GIKYRKN +
Sbjct: 121 QTTEPDALARSVSITAVKKKGNALSLKRSHSSQLAHTTSSEIPGSVPWRRAGIKYRKNSI 180
Query: 620 FLDVIESVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFE 769
++D++E +NLL +S GNVLRS++ G +KMR LSGMPE + GLNDK+ F+
Sbjct: 181 YIDIVERMNLLISSTGNVLRSDVSGVVKMRAMLSGMPECQFGLNDKLDFK 230
>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 425
Score = 68.1 bits (159), Expect = 1e-12
Identities = 50/217 (23%), Positives = 92/217 (42%), Gaps = 8/217 (3%)
Frame = +2
Query: 122 AIYILAVKGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEGMLTPLLQTSE--CTFAYIKT 295
AIY++ G +L+ RG ++ L + P + ++ F ++
Sbjct: 6 AIYLVDTNGALLLQLESRGRTSPITLEHIKNELFRYKLRNEEPPFILHNKNFLIFQELEE 65
Query: 296 NNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFGY 475
+ + TT + + + +IV+V+ +F + N VI +LL E+ID+GY
Sbjct: 66 DVRLCIPTTCDTEPL-YIHDIMRRIVDVVKTFFGGFNASKVEKNVCVIVQLLAEMIDYGY 124
Query: 476 PQTTDSKILQEYITQEGHKLE------MQPKIPMAVTNAVSWRSEGIKYRKNEVFLDVIE 637
+ LQ+ + + +Q P + V WR+ KY NE F+ V+E
Sbjct: 125 ATCMEPNALQDIVPLPSFMNKFMAVTGLQTNTPTLARDTVPWRTAKAKYATNEFFIHVLE 184
Query: 638 SVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGL 748
V+ + NG + + ++ + +SGMP L L L
Sbjct: 185 RVSAVYQPNGKLAFGTVKSDMECKCQISGMPLLLLSL 221
>SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 240
Score = 52.0 bits (119), Expect = 1e-07
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 3/144 (2%)
Frame = +2
Query: 122 AIYILAVKGKVLISRNYRGDVDLGV---IDKFMPLLMEKEEEGMLTPLLQTSECTFAYIK 292
A+ I+ GK +ISR +R + V + F L+ EK + +++ F Y
Sbjct: 5 AVSIVNRGGKAIISRQFREMSRVRVESLLSSFPALVSEKSQN----TTVESDNVRFVYQP 60
Query: 293 TNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFG 472
+ LYIV T +NI L+ + +V+T LEE I + I+ DE G
Sbjct: 61 LDELYIVLITNLQSNILQDIDTLHLLSQVVTSICSSLEEREILEYAFEIFTAFDEATSLG 120
Query: 473 YPQTTDSKILQEYITQEGHKLEMQ 544
Y ++ Y+ E H+ ++Q
Sbjct: 121 YRDNVSLTQIKTYLEMESHEEKIQ 144
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 34.7 bits (76), Expect = 0.016
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Frame = -2
Query: 411 SSSNSLKYSVITSTILYKNTNTSAILAFFFVVDTMYKLLVLI*ANVHSLVCNKGVNIPSS 232
S S ++ T TI T+TS+I+ + V+T+Y+ + + + S++ N I S
Sbjct: 336 SLSTEVEVEYFTKTI----TDTSSIVTYSTGVETLYETETITSSEISSIIYNFSTPISGS 391
Query: 231 SFSIS-KGMNLSITPRSTSPR*FLEMRTLPLTASM 130
SF K +N + P TS + TLP ++ M
Sbjct: 392 SFPDGFKPINPTSFPSLTSSTKKIPSTTLPTSSKM 426
>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 29.1 bits (62), Expect = 0.77
Identities = 20/99 (20%), Positives = 39/99 (39%)
Frame = +2
Query: 218 LMEKEEEGMLTPLLQTSECTFAYIKTNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFK 397
L+ + + L+ Y + LY N + ++ VE++ +F
Sbjct: 38 LISQRNQKFQANFLEWENSKLVYRRYAGLYFCFCVDSTDNDLAILEMIHFFVEILDSFFG 97
Query: 398 ELEEESIRDNFVVIYELLDELIDFGYPQTTDSKILQEYI 514
+ E + NF + +LDE+I G ++ K + E I
Sbjct: 98 NVCELDLIFNFYKVSAILDEIILGGEIGESNKKSVLERI 136
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 617 LHSFYILCLRTSTTQHW*PPWVFWAAFQVYD 525
+H FY L +T Q W P++FW +D
Sbjct: 423 IHIFYFLFFHVATIQQW--PFLFWLPSTKFD 451
>SPBC609.04 |caf5||spermine family transmembrane transporter
Caf5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 251 PLLQTSECTFAYIKTNNLYIVSTTKKNANIALVFVFLYKIV 373
P+L TS F I+ +Y+ +A FVFLYK++
Sbjct: 342 PILFTSVYHFTIIENGLVYLGILVGALITLACYFVFLYKVM 382
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 181 ITTVISRNENFTFDS*YVYSRRRHSEAVPARF*INL 74
I V SRN NF FDS Y + S P R +++
Sbjct: 693 INDVSSRNLNFDFDSKIFYLTQSESAESPLRLSVSI 728
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 414 LSSSNSLKYSVITSTILYKNTNT-SAILAFFFVVDTMYKLLVL 289
++ SN Y +I + KNT +A+++FF + T YK L L
Sbjct: 794 INFSNCFTYWIINCILEKKNTKARTAVISFF--IQTAYKCLSL 834
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 407 EESIRDNFVVIYELLDELIDFGYPQTTDSKILQEYITQEGHKLE 538
E SI VV ELL+ L ++ DS + Y+T G L+
Sbjct: 66 ETSIMKLLVVTKELLESLTNWSKGTVNDSAVSSVYVTLIGEFLQ 109
>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 400
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +2
Query: 422 DNFVVIYELLDELIDFGYPQTTDSKILQEYITQEGHKLEMQ 544
DN + +++ L E+ G + S L+ Y+ +G +E+Q
Sbjct: 59 DNLISLHKSLVEIESLGGNEVNVSDFLKSYLESKGLTVELQ 99
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 252 GVNIPSSSFSISKGMNLSITPRSTSPR*FLEM 157
G I S+ FS+ + + L+ RS SPR FLE+
Sbjct: 119 GGKITSAFFSLLQSVLLNHGQRSISPRNFLEI 150
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 397 FEVLSHNFNNFVQEYKHKCNISIF 326
FE L+ NF+NFV+ +++ N+ F
Sbjct: 4269 FEKLTFNFSNFVKYRQYQINLKDF 4292
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,231,855
Number of Sequences: 5004
Number of extensions: 67954
Number of successful extensions: 195
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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