Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_A04
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   0.71 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.2  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   6.6  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 263 VHPLHHRRARQHLGAVSVLRPQHLRRQRGPAPQAAGA 373
           +HP   ++A+QH G V+      L +Q+  APQ A +
Sbjct: 221 MHPRQQQQAQQHQGVVT----SPLSQQQQAAPQGAAS 253


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 54  VKTGRGNRHFYFFWKTHFFC 113
           V+  R N  F  FW+ HF C
Sbjct: 417 VENNRRNPWFVEFWEHHFQC 436


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 216 LIPADVLRDFPGMCFASTRCITVEP 290
           +IPA++     G C   +  IT+EP
Sbjct: 19  VIPAELTAKLLGNCVRVSPVITIEP 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,644
Number of Sequences: 438
Number of extensions: 2804
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)