Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_P21
         (315 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    28   0.38 
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe...    27   0.89 
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    25   2.0  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   2.7  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    25   2.7  
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    24   4.7  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    24   6.3  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    24   6.3  
SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos...    23   8.3  

>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.9 bits (59), Expect = 0.38
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 206 WLLARSKFLIPNILF*YNYSSKCSLKFFY 292
           W+LAR KF   N    YNYS+K  +  F+
Sbjct: 408 WMLARPKFSQINTSHLYNYSTKQMISKFW 436


>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 26.6 bits (56), Expect = 0.89
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 208 VVSAK*IPNSKHFVLVQLFFEV*SQIFLSSAGRIHL 315
           ++S   IP   HF+L  L F   S+  L   GR+HL
Sbjct: 140 IISIIEIPIKLHFILNVLLFLKFSEYMLPLLGRVHL 175


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 172 HVPLLGDILKDLVVSAK*IPNSKHF 246
           HVP+  DI    +V  K   N KHF
Sbjct: 382 HVPVFNDIYLTKIVKNKATANKKHF 406


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 313 NEFGRPMIKKFETTLRRIIVLKQNV 239
           NE  +P+IKK  T+L RI+  K +V
Sbjct: 332 NEGRKPIIKKLVTSLSRIVNEKPSV 356


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = -2

Query: 236 ELGIYFALTTKSLRMSPNKGT 174
           E G+ F+L++KSLR+S  KGT
Sbjct: 70  ERGV-FSLSSKSLRLSNRKGT 89


>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 190 RPTKEHERYLHSAKKQGFQR*DEXPRQPDG 101
           RPT+  ER+  +   +GF   DE  R  DG
Sbjct: 243 RPTRRRERHYRTRDDEGF---DEFGRSRDG 269


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 151  WRSADNAHVPLLGDILKDLVVS 216
            WRSAD+ H+P +   L   V+S
Sbjct: 1114 WRSADDLHLPYITRALLTNVLS 1135


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = -3

Query: 196 ECRPT-KEHERYLHSAKKQGFQR 131
           +CR     H RYL SAKK G  R
Sbjct: 20  QCRNKYHSHVRYLSSAKKSGILR 42


>SPBC1347.06c |cki1||serine/threonine protein kinase
           Cki1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 255 TIILRSVVSNFFIIGRPNS 311
           +++ R +  + F+IGRPNS
Sbjct: 126 SLVYRDIKPDNFLIGRPNS 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,289,769
Number of Sequences: 5004
Number of extensions: 22342
Number of successful extensions: 36
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)