Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_P21
         (315 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0808 + 11412981-11413259                                         29   1.0  
11_04_0476 + 18190600-18191259                                         28   1.8  
06_01_1160 - 9868340-9868360,9868639-9868986                           27   3.1  
04_04_1492 - 33974804-33975040,33975121-33975214,33975351-339757...    25   9.4  
01_05_0253 + 19968193-19969140                                         25   9.4  

>03_02_0808 + 11412981-11413259
          Length = 92

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 234 IRNLLRAN-NQIFKNVAQQRNMSVICTPPRNKVSRG 130
           +R +LR N + +F    QQR M  +  PPR K   G
Sbjct: 50  VRKVLRENQDMVFIQQPQQREMGGLIMPPRGKTKLG 85


>11_04_0476 + 18190600-18191259
          Length = 219

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 104 WWWAGLPSQPGCWSTS 57
           WWW  LP QPG   T+
Sbjct: 127 WWWPTLPRQPGAPPTA 142


>06_01_1160 - 9868340-9868360,9868639-9868986
          Length = 122

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 219 RANNQIFKNVAQQRNMSVICTPPRNK 142
           +A  Q+ +  A  RNM VICT P  K
Sbjct: 84  QAGRQVGRRPASIRNMRVICTTPNYK 109


>04_04_1492 -
           33974804-33975040,33975121-33975214,33975351-33975754,
           33975855-33976747,33977014-33977167
          Length = 593

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 124 HLTSGNLVSWRSADNAHVP 180
           H  SG+LV+W + DNA  P
Sbjct: 82  HSVSGDLVNWAALDNALDP 100


>01_05_0253 + 19968193-19969140
          Length = 315

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
 Frame = +1

Query: 91  PAHHHQAGXEXHLTSGNLVSWRSADNAHVPLL-GDIL 198
           PAHHH  G +  + SG    W         L+ GD L
Sbjct: 228 PAHHHTFGHDLVVISGKKKVWNLTKKESYDLVDGDFL 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,429,383
Number of Sequences: 37544
Number of extensions: 150092
Number of successful extensions: 321
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)