Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_P21
         (315 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC133052-1|AAI33053.1| 1859|Homo sapiens PCM1 protein protein.         27   8.8  
AK126091-1|BAC86434.1|  161|Homo sapiens protein ( Homo sapiens ...    27   8.8  
AK125088-1|BAC86048.1|  221|Homo sapiens protein ( Homo sapiens ...    27   8.8  

>BC133052-1|AAI33053.1| 1859|Homo sapiens PCM1 protein protein.
          Length = 1859

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -3

Query: 208 PNL*ECRPTKEHERYLHSAKKQGFQR*DEXPRQ-PDGGGLXCHPSLGVGQH 59
           P+L +CR  +E E+ +H A+ +  +  +E   +   G  L  H S  V +H
Sbjct: 599 PSLADCRYNREGEQEIHVAQGEDDEEEEEAEEEGVSGASLSSHRSSLVDEH 649


>AK126091-1|BAC86434.1|  161|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44103 fis, clone TESTI4044084. ).
          Length = 161

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 91  PAHHHQAGXEXHLTSGNLVSWRSADNAHVPL 183
           PA H +AG   H T GN  + R A   H P+
Sbjct: 59  PAWHPRAGCSSHGTDGNAKAHREALAPHCPV 89


>AK125088-1|BAC86048.1|  221|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43098 fis, clone CTONG1000488. ).
          Length = 221

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 155 RQETRFPEVR*XSXPA*WWWAGLPSQPGCWSTSSITATSNKI 30
           R  T+FP  R  + P+   WA  P +P C S SS  A  +++
Sbjct: 161 RPGTQFP-ARATARPSRMLWARGPGRPHCGSCSSPAAARHRV 201


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,185,502
Number of Sequences: 237096
Number of extensions: 873750
Number of successful extensions: 1636
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1636
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1453211950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)