Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_P21
         (315 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006662-3|AAF39895.1|  368|Caenorhabditis elegans Hypothetical ...    29   0.53 
Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical pr...    28   1.2  
U41538-5|AAG00012.2|  762|Caenorhabditis elegans Hypothetical pr...    27   2.1  
AF098997-10|AAC68712.2|  325|Caenorhabditis elegans Serpentine r...    27   2.1  
AF067211-8|ABB51202.1|   99|Caenorhabditis elegans Hypothetical ...    27   2.8  
U12964-4|AAA91219.3|  447|Caenorhabditis elegans Temporarily ass...    26   5.0  
AF098997-9|AAC68720.1|  325|Caenorhabditis elegans Serpentine re...    26   6.6  
U53139-5|AAK18933.2|  322|Caenorhabditis elegans Serpentine rece...    25   8.7  

>AC006662-3|AAF39895.1|  368|Caenorhabditis elegans Hypothetical
           protein H23L24.4 protein.
          Length = 368

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 203 IWLLARSKFLIPNILF*YNYSSKCSLKFFY 292
           +W    SK+L+PN +F Y  SS C+  + +
Sbjct: 35  LWDRTYSKYLLPNSIFLYKRSSTCTRTYIF 64


>Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical
           protein Y70C5A.2 protein.
          Length = 1037

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +2

Query: 143 LFLGGVQITLMFLCWATFLKIWLLA 217
           LFL G+Q+TL+F C+  FL I  LA
Sbjct: 214 LFLLGIQVTLLF-CFLLFLPICFLA 237


>U41538-5|AAG00012.2|  762|Caenorhabditis elegans Hypothetical
           protein R04E5.2 protein.
          Length = 762

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 213 NNQIFKNVAQQRNMSVICTPPRNKVSRGEM-XFXASLM 103
           N + F+N+ Q+    V+  PP+N  S G +  F A +M
Sbjct: 572 NPKAFENLIQRNIREVLIVPPKNSTSPGTLNLFEAGVM 609


>AF098997-10|AAC68712.2|  325|Caenorhabditis elegans Serpentine
           receptor, class i protein43 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 134 LETLFLGGVQITLMFLCWATFLKIWLLARSKFLIPNILF 250
           + T  L G+Q  L+FLC+A   +     +   +IP ILF
Sbjct: 91  ITTHLLLGIQYVLLFLCFARRHQAIAKIKQHHVIPEILF 129


>AF067211-8|ABB51202.1|   99|Caenorhabditis elegans Hypothetical
           protein B0205.13 protein.
          Length = 99

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 70  HPGWDGXPAHHHQAGXEXHLTSGNLVSWRSADNAHVP 180
           HP W+    HHHQ   + H  + N V+ ++A +  +P
Sbjct: 54  HPWWN----HHHQCWHQYHHRTENTVNSQNAPSQVIP 86


>U12964-4|AAA91219.3|  447|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 340 protein.
          Length = 447

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 122 LISPLETLFLGGVQITLMFLCWATFLKIWLLARSKFLIPNILF*YNYSS 268
           L++ L  L LG V    +   W T +    LA S +++  +LF +N+SS
Sbjct: 75  LLAVLRMLILGVVYGICLVKQWYT-VAFTTLASSAYILMKVLFYFNHSS 122


>AF098997-9|AAC68720.1|  325|Caenorhabditis elegans Serpentine
           receptor, class i protein42 protein.
          Length = 325

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 155 GVQITLMFLCWATFLKIWLLARSKFLIPNIL 247
           GVQ  L+FLC+A   +     + + +IPN L
Sbjct: 98  GVQYVLLFLCFARRHQAIAKIKQQHVIPNFL 128


>U53139-5|AAK18933.2|  322|Caenorhabditis elegans Serpentine
           receptor, class xa protein4 protein.
          Length = 322

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 185 WATFLKIWLLARSKFLIPNILF*YNYSSKCSLKF 286
           W T +K+ L + S  LI  ++    Y S+CSL F
Sbjct: 127 WFTDIKLALYSMSIMLILFVVLLIPYYSECSLNF 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,261,578
Number of Sequences: 27780
Number of extensions: 133205
Number of successful extensions: 289
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)