Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_P21
         (315 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   0.66 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   2.0  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   2.7  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   2.7  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   4.7  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 0.66
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 124 EXPRQPDGGGLXCHPSLGVGQHQALPRQAIKLSQKN 17
           E PR+ +   L C P L  GQ Q+ P+   +  + N
Sbjct: 339 EPPRRKNNCPLHCKPEL--GQSQSSPKFVARREESN 372


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 140 TLFLGGVQITLMFLCWATF 196
           T  L  V IT  F+CWA F
Sbjct: 259 TRMLSAVVITF-FICWAPF 276


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +2

Query: 164 ITLMFLCWATF 196
           + L F+CWA F
Sbjct: 276 VILFFICWAPF 286


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 88  CHPSLGVGQHQALPRQAIKLSQKNM 14
           C P L +    A  +QA+++S  N+
Sbjct: 430 CKPKLKIADLSAHDKQAVRMSALNV 454


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 164 ITLMFLCWATFLKIWLLA 217
           +   F+CWA F    LLA
Sbjct: 291 VVAFFICWAPFHAQRLLA 308


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,187
Number of Sequences: 438
Number of extensions: 1592
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)