Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_P19
         (546 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical pr...   194   5e-50
Z66499-3|CAA91300.1|  348|Caenorhabditis elegans Hypothetical pr...    29   2.9  
M34451-1|AAA28143.1|  348|Caenorhabditis elegans protein ( C.ele...    29   2.9  
Z29094-3|CAA82343.1|  358|Caenorhabditis elegans Hypothetical pr...    28   3.8  
AF047663-2|AAC04450.1|  252|Caenorhabditis elegans Delta/serrate...    28   3.8  
U80027-2|AAC48132.1|  208|Caenorhabditis elegans Glutathione s-t...    27   8.8  

>Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical
           protein F36A2.6 protein.
          Length = 151

 Score =  194 bits (472), Expect = 5e-50
 Identities = 94/145 (64%), Positives = 113/145 (77%)
 Frame = -2

Query: 503 TRNMAEVDETLKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXRGLKRKPMA 324
           T++ A + E LKKKR FRKF YRGVDLDQLLDM  EQ  +L+         RGLKRK +A
Sbjct: 3   TQDDAHLAE-LKKKRTFRKFMYRGVDLDQLLDMSREQFTKLLPCRMRRRLDRGLKRKHLA 61

Query: 323 LVKKLRRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHY 144
           L+ K+++AKK A   EKP  VKTHLR+MII+PE+VG ++GIYNGK FNQ EIKPEMIG Y
Sbjct: 62  LIAKVQKAKKAAGVLEKPATVKTHLRDMIILPELVGGVIGIYNGKVFNQTEIKPEMIGFY 121

Query: 143 LGEFSVTYKPVKHGRPGIGATHSXK 69
           LGEF+++YKPVKHGRPGIGATHS +
Sbjct: 122 LGEFAISYKPVKHGRPGIGATHSSR 146


>Z66499-3|CAA91300.1|  348|Caenorhabditis elegans Hypothetical
           protein T01B7.7 protein.
          Length = 348

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 484 STKPSRKSVFSGSSLTGELISISSLICPMSNSWN 383
           +T  S   VFSG++L   L + +SL   +SN WN
Sbjct: 4   TTATSGAIVFSGATLLVSLFAAASLYSQVSNIWN 37


>M34451-1|AAA28143.1|  348|Caenorhabditis elegans protein (
           C.elegans collagen (rol-6) gene, complete cds. ).
          Length = 348

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 484 STKPSRKSVFSGSSLTGELISISSLICPMSNSWN 383
           +T  S   VFSG++L   L + +SL   +SN WN
Sbjct: 4   TTATSGAIVFSGATLLVSLFAAASLYSQVSNIWN 37


>Z29094-3|CAA82343.1|  358|Caenorhabditis elegans Hypothetical
           protein C07A9.5 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -2

Query: 140 GEFSVTYKPVKHGRPGIGA---THSXKVHSAQVERLKQPL 30
           G FS  +    H RP +     THS K  ++++ERL Q +
Sbjct: 59  GRFSTNHSTWTHSRPTVSGERFTHSFKTLASRMERLDQTI 98


>AF047663-2|AAC04450.1|  252|Caenorhabditis elegans
           Delta/serrate/lag-2 domain protein1 protein.
          Length = 252

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -2

Query: 197 NGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSXKVHSAQVERL 42
           N ++FN +++KP  +G       V+  PVK GRPG+       V   Q+ R+
Sbjct: 46  NKRSFN-LQLKPNRVGF------VSNIPVKFGRPGLVLVDCSPVEKFQIHRV 90


>U80027-2|AAC48132.1|  208|Caenorhabditis elegans Glutathione
           s-transferase protein23 protein.
          Length = 208

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -3

Query: 514 LSNKQETWLRSTKPSRKSVFSGSSLTGELISISSLICPMSNSWN 383
           L  K  T +++     K  +   +L GEL+ I  L C  +N  N
Sbjct: 97  LRTKYFTMIKTDYEDGKEAYITETLPGELLRIEKLFCTFNNGEN 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,161,227
Number of Sequences: 27780
Number of extensions: 213535
Number of successful extensions: 610
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)