Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_P14
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       27   4.6  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   4.6  
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ...    27   4.6  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    26   8.0  

>SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 151

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 443 TIEDKTSPPQTELFCYKEQYQLSYVFPPVEVCD 541
           ++E+ T  PQ  LFC   +   +++FPP+ + D
Sbjct: 38  SLENDTQLPQI-LFCINPKSIRNFLFPPIAISD 69


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +3

Query: 552 SRLVVGIIHFSFKL 593
           SRLVVGI+HF F L
Sbjct: 446 SRLVVGIVHFFFSL 459


>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
 Frame = -2

Query: 689 SILEYCSQVWNPRYKIYINRL----ETIQTKFMRFLQFKTKVYD 570
           S+LE C Q  +P  KI I+ L    + ++ KF    Q+++ ++D
Sbjct: 364 SVLEICLQRSDPFTKIIIDELSILDKELENKFSPLFQYRSDMFD 407


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
 Frame = -2

Query: 794 NIVXRAYISLGFIKRLGAQFTSAKIFKVLYC-AYVRSILEYCSQ-----VWNPRYKIYIN 633
           N   R Y     IKR+   +   +    +Y    V  ILE CS      +  P  ++ I 
Sbjct: 489 NTFVREYPFDSEIKRMAVIYEDQQGQYTVYAKGAVERILERCSTSNGSTLEEPDRELIIA 548

Query: 632 RLETIQTKFMRFLQFKTKVYD 570
           ++ET+  + +R L   TKV D
Sbjct: 549 QMETLAAEGLRVLALATKVID 569


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,125,854
Number of Sequences: 5004
Number of extensions: 58506
Number of successful extensions: 157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)