Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_P14
         (870 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           25   1.2  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         22   6.4  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   6.4  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    22   8.5  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = -2

Query: 680 EYCSQVWNPRYKIYINRLETIQTKFMRFLQFKTKVYDPDYETRCRRHHILPLEE 519
           EY   VW    K+ +    +I +  + +  FK  V +   +T C  ++++P  E
Sbjct: 492 EYDQNVWVLSNKLAMYLYGSIDSSKINYRIFKANVKEAVKDTXCDPNYVVPDSE 545


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -2

Query: 593 QFKTKVYDPDYETRCRRHHILPLEERRRIADIV 495
           Q + +  +PD E       +LPL  RR   D++
Sbjct: 35  QIEEENIEPDTELMDSNEPLLPLRHRRVTCDVL 67


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 405 REPSIISSRSTSWWYKLQ 352
           R PS++  + +S W KL+
Sbjct: 121 RNPSVVGRKKSSGWRKLR 138


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 420 EIHNAREPSIISSRSTSWWY 361
           E   +REP IISS S ++ Y
Sbjct: 72  ERERSREPKIISSLSNNYNY 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,890
Number of Sequences: 438
Number of extensions: 3987
Number of successful extensions: 44
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)