Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_P12
         (784 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical pr...   249   2e-66
AF067610-1|AAC17538.2|  696|Caenorhabditis elegans Hypothetical ...    31   0.70 
Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z93390-6|CAB07675.4|  816|Caenorhabditis elegans Hypothetical pr...    28   8.7  
Z93390-1|CAE46674.1|  540|Caenorhabditis elegans Hypothetical pr...    28   8.7  
Z80214-7|CAC42261.2|  816|Caenorhabditis elegans Hypothetical pr...    28   8.7  
AF125951-3|AAY86273.1|  244|Caenorhabditis elegans Hypothetical ...    28   8.7  

>Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical
           protein F54C9.5 protein.
          Length = 293

 Score =  249 bits (609), Expect = 2e-66
 Identities = 127/249 (51%), Positives = 160/249 (64%), Gaps = 1/249 (0%)
 Frame = -3

Query: 779 YNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGX 600
           YNTPKYRLIVR++NKDV  Q+AYS+IEGD +V +AYSHELPRYG+KVGLTNYAAAY+TG 
Sbjct: 44  YNTPKYRLIVRITNKDVVAQLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAAAYATGL 103

Query: 599 XXXXXXXXXXXXXXXXXXXXXXXXDEYNVEPV-DNGPGAFRCYLDVGLARTTTGARVFGA 423
                                   ++YNVE   D  P  F+  LD+GLARTTTG+++F  
Sbjct: 104 LLARRHLKTIGLDSTYKGHEELTGEDYNVEEEGDRAP--FKAVLDIGLARTTTGSKIFAV 161

Query: 422 MKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQ 243
           MKG  DGG+NVPHS  RF G+D ESK++NAE HR  I G HVA+YM  L+++DED +KRQ
Sbjct: 162 MKGVADGGINVPHSESRFFGFDQESKEYNAEAHRDRILGKHVADYMTYLKEEDEDRYKRQ 221

Query: 242 FSKYIKLGVTADAIEAIYKKAHEAIRADPXHXXXXXXXXXXXXKRWNXRKLTLAERKNKX 63
           FSK++  G+ AD + A Y+K H AIRAD               KR   ++LT  ERK + 
Sbjct: 222 FSKFLAAGLNADNLVATYQKVHSAIRAD---ASPAAKKAAKPSKRHTAKRLTYDERKQRV 278

Query: 62  QAKEGCLXQ 36
             K+  L Q
Sbjct: 279 ADKKALLLQ 287


>AF067610-1|AAC17538.2|  696|Caenorhabditis elegans Hypothetical
           protein F41A4.1 protein.
          Length = 696

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = -3

Query: 518 NVEPVDNGPGAFRCYL-DVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKK 342
           N EP++   G F C+L       TT+G+R  G      +  L    + ++FPG    +  
Sbjct: 68  NAEPIEKKNGGFNCHLHSKSPVLTTSGSRTVGTKTCLENKCLKRSFAFEKFPGRSLVNSS 127

Query: 341 F 339
           F
Sbjct: 128 F 128


>Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical
           protein K10G4.5 protein.
          Length = 1251

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -3

Query: 779 YNTPKYRLIVRLSNKDVTCQVAYSRIEGDHI---VCAAYSHEL 660
           YN P+YR +++L  K   C+     + GD++   +CA +  EL
Sbjct: 548 YNDPEYRNVMKLKIKSPICE--QCEVTGDNLPFGICAEHETEL 588


>Z93390-6|CAB07675.4|  816|Caenorhabditis elegans Hypothetical
           protein T23B5.3a protein.
          Length = 816

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 632 SDQPSHHNVATHVNKQRTQYGHLQSESRP 718
           SD P HH   +H + Q  Q  HLQ    P
Sbjct: 17  SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45


>Z93390-1|CAE46674.1|  540|Caenorhabditis elegans Hypothetical
           protein T23B5.3b protein.
          Length = 540

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 632 SDQPSHHNVATHVNKQRTQYGHLQSESRP 718
           SD P HH   +H + Q  Q  HLQ    P
Sbjct: 17  SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45


>Z80214-7|CAC42261.2|  816|Caenorhabditis elegans Hypothetical
           protein T23B5.3a protein.
          Length = 816

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 632 SDQPSHHNVATHVNKQRTQYGHLQSESRP 718
           SD P HH   +H + Q  Q  HLQ    P
Sbjct: 17  SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45


>AF125951-3|AAY86273.1|  244|Caenorhabditis elegans Hypothetical
           protein D2063.4 protein.
          Length = 244

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/55 (25%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
 Frame = +3

Query: 189 VDGFNSICSDS*FYVLAELSLERILIILFK--TSHVFSNMQTKDVSPVYFSIELF 347
           VDGF ++CS S   V + L ++++  +L +   +HV  ++  ++++ +   IE++
Sbjct: 53  VDGFRNVCSGSDLSVRSNLDVKQLSELLKEDPCTHVAGDVVIENLTDIAIPIEVY 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,951,492
Number of Sequences: 27780
Number of extensions: 314515
Number of successful extensions: 793
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)