Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_P11
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    28   1.7  
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    27   3.0  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   7.0  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   7.0  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    25   9.2  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    25   9.2  
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom...    25   9.2  

>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -3

Query: 599 QDRSLVYLGGNDGIFVLDTGSSQLLPYSSRGDPIESIF 486
           QD +L+    + G++    G+S  L +   G P E ++
Sbjct: 884 QDSNLIEKSSSGGVYASQPGASGYLSHDQSGSPFEDVY 921


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -3

Query: 755 LRSENVLXYSFEPRIEDLEYYKIGFVNLDAPEKTGVINSPNYVMNFGSFDIDQ 597
           + S NV  Y  E   + +E Y+I  + +DA ++      PNY    G F I +
Sbjct: 201 IESTNVADYLHEHIHDMVERYQIDGIRIDAVKQMNPEFFPNYTSAAGVFAIGE 253


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 23  SMALKQNKSLNFIQLSSCQWSLLIS 97
           S+ L +NK + F+ ++S QW   IS
Sbjct: 411 SLPLPKNKKVTFVWVNSLQWKTWIS 435


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 360 YVSFVDNKFVYRHIF*NGLKIIAFL 434
           ++ F+ NK+ YR+ F   +K ++FL
Sbjct: 265 FIEFIRNKYQYRNFFMAQVKTLSFL 289


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -3

Query: 593 RSLVYLGGNDGIFVLDTGSSQLLPYSSRGDPIESIFYKNNVYF 465
           + ++  GG D +   + G + +    ++ DP  S     NVYF
Sbjct: 59  KKVIKRGGYDAVSATEDGWTNIAEEFNQSDPARSAGILQNVYF 101


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -3

Query: 614 SFDIDQDRSLVYLGGNDG-IFVLDTGSSQLLPYSSRGDPIESI-FYKNNVYF 465
           SFD  +D  ++ LGG  G I   D  + +LL      + +  + ++ N+ YF
Sbjct: 106 SFDYTRDGRMILLGGRKGHISAFDWRTGKLLTELHLRETVRDVKWFHNHQYF 157


>SPAC25H1.08c |||ribosome biogenesis protein
           Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/44 (29%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
 Frame = -3

Query: 614 SFDIDQDRSLVYLGGNDG-IFVLDTGSSQLL-PYSSRGDPIESI 489
           SFD + + ++++LGG+ G + V++  SS +L    ++ + +E+I
Sbjct: 248 SFDCNAEGNVLFLGGSSGKVKVVNINSSHILASLEAQTESVEAI 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,024,019
Number of Sequences: 5004
Number of extensions: 63060
Number of successful extensions: 190
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)