Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_P11
         (781 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0093 - 1360596-1360625,1363562-1364266                           29   5.5  
10_08_0033 - 14305552-14305700,14306735-14307153,14307227-14307420     28   9.6  
02_05_1134 - 34352154-34352375,34353683-34353746,34353820-343548...    28   9.6  
02_02_0513 + 11100307-11100363,11101423-11101728                       28   9.6  
02_02_0512 + 11092907-11093204,11095454-11095580,11096016-110965...    28   9.6  

>09_01_0093 - 1360596-1360625,1363562-1364266
          Length = 244

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +3

Query: 513 TAIREE---LTGARVQYKYSVISAQVNQGSVLIDIKTTEVHYVV 635
           T +REE    T  + Q  Y+V  A +NQ  VL++  T ++ +V+
Sbjct: 132 TEVREEPPRCTNFQDQVDYAVQRALINQSGVLVNTLTNKIKFVI 175


>10_08_0033 - 14305552-14305700,14306735-14307153,14307227-14307420
          Length = 253

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +1

Query: 142 NAIAPIXGXCAILTTLESTXFHLT-ITLYIPSIHHAYTSPSRSTVRPLKKGF 294
           N +  I    A  T+     FHLT   L  P+IH+  +SPS    R + + F
Sbjct: 201 NGVGEIPPAVAATTSHALLVFHLTGYPLVAPTIHYLSSSPSHDPARLIYECF 252


>02_05_1134 -
           34352154-34352375,34353683-34353746,34353820-34354859,
           34355193-34355261,34355502-34355606,34355992-34356161,
           34356244-34356351,34356397-34356525,34356577-34356681,
           34357186-34357475,34357575-34357679,34358195-34358289,
           34358474-34358569,34358660-34358782,34359120-34359174,
           34359254-34359417,34359881-34359971,34360180-34360334,
           34360823-34361002,34361314-34361487,34361776-34361917,
           34362023-34362325,34362443-34362522
          Length = 1354

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
 Frame = +3

Query: 528 ELTGARVQYKYSVISAQVNQGSVLIDIKTTEVHYVVWAIDH-----TRFLGRVQVNEPNF 692
           EL G  V+  Y  + A V+QGS+        V   VW I          +G +Q  EP  
Sbjct: 470 ELQGYSVRLLYMALQAFVDQGSL--------VRVAVWCIGEYGEMLVNNVGMLQGEEPIT 521

Query: 693 VILEIFYSRL 722
           +I+ IF+S +
Sbjct: 522 IIIAIFFSAI 531


>02_02_0513 + 11100307-11100363,11101423-11101728
          Length = 120

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -3

Query: 584 VYLGGNDGIFVLDTGSSQLLPYSSRGDPIES 492
           ++L G DG   LD G++Q LP S  GDPI +
Sbjct: 63  IFLFG-DG--ALDVGNNQYLPSSEAGDPIRA 90


>02_02_0512 +
           11092907-11093204,11095454-11095580,11096016-11096560,
           11096679-11096890
          Length = 393

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -3

Query: 584 VYLGGNDGIFVLDTGSSQLLPYSSRGDPIES 492
           ++L G DG   LD G++Q LP S  GDPI +
Sbjct: 44  IFLFG-DG--ALDVGNNQYLPSSEAGDPIRA 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,659,723
Number of Sequences: 37544
Number of extensions: 372766
Number of successful extensions: 843
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)