Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_P05
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    56   6e-09
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    32   0.11 

>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 56.0 bits (129), Expect = 6e-09
 Identities = 31/99 (31%), Positives = 50/99 (50%)
 Frame = -3

Query: 814 VVSEVLRLWPPVIALDRXCVKXYNLGKPNDKSKEDFIIRKDVAVGIPVWGLHRDPEFFPN 635
           VV E LRL PPV+ +     K + +         D+ + KD  V   ++G   D + +P 
Sbjct: 375 VVKECLRLRPPVLMVPYRVKKAFPI-------TPDYTVPKDAMVIPTLYGALHDSKVYPE 427

Query: 634 PLKFDPERFSEENKHNIKPFSYMPFGLGPRNCIGSRFAL 518
           P  F+P+R++        P ++M FG GP  C+G R+A+
Sbjct: 428 PETFNPDRWAPNGLAEQSPKNWMVFGNGPHVCLGQRYAV 466


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 16/114 (14%)
 Frame = -3

Query: 814 VVSEVLRLWPPVIALDRXCVKXYNLGKPNDKSKEDFIIRKDVAVGIPVWGLHR-DPEFFP 638
           V+ E LRL PP+ +  R   +  +L  P  K     I   +  +  P  GL   + E+F 
Sbjct: 342 VIQETLRLHPPIHSHMRKVKR--DLPVPGSKI---VIPANNYLLAAP--GLTATEEEYFT 394

Query: 637 NPLKFDPERFSE-----ENKHNIK----------PFSYMPFGLGPRNCIGSRFA 521
           +   FDP+R+++     EN   I              Y+PFG G   CIG +FA
Sbjct: 395 HATDFDPKRWNDRVNEDENAEQIDYGYGLVTKGAASPYLPFGAGRHRCIGEQFA 448


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,163,289
Number of Sequences: 5004
Number of extensions: 61565
Number of successful extensions: 139
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)