Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_P04
         (888 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   3.2  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   5.6  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    22   5.6  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    22   5.6  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    22   5.6  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    22   5.6  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    22   5.6  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    22   5.6  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    22   5.6  
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    22   7.4  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    22   7.4  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   9.8  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   9.8  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    21   9.8  

>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = +3

Query: 261 RKCPEFFRQKSIKESMAKSCLSYAEALKLHPPVGRSYSDVLSTPISPPISHIKVSNPKSE 440
           R  P   +  + +   + SC  YA++       G +    LST  +PP S   +S P + 
Sbjct: 80  RLAPTHLQSPNTQTHPSASC-KYADSTS---STGVASPQDLSTNGAPPRSTPPLSTPSNS 135

Query: 441 NVNKS 455
           N  KS
Sbjct: 136 NATKS 140


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 381 LSTPISPPISHIKVSNPKSENVNKS 455
           LST  +PP S   +S P + N  KS
Sbjct: 116 LSTNGAPPRSTPPLSTPSNSNATKS 140


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 381 LSTPISPPISHIKVSNPKSENVNKS 455
           LST  +PP S   +S P + N  KS
Sbjct: 116 LSTNGAPPRSTPPLSTPSNSNATKS 140


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 381 LSTPISPPISHIKVSNPKSENVNKS 455
           LST  +PP S   +S P + N  KS
Sbjct: 116 LSTNGAPPRSTPPLSTPSNSNATKS 140


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 381 LSTPISPPISHIKVSNPKSENVNKS 455
           LST  +PP S   +S P + N  KS
Sbjct: 116 LSTNGAPPRSTPPLSTPSNSNATKS 140


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 381 LSTPISPPISHIKVSNPKSENVNKS 455
           LST  +PP S   +S P + N  KS
Sbjct: 116 LSTNGAPPRSTPPLSTPSNSNATKS 140


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 381 LSTPISPPISHIKVSNPKSENVNKS 455
           LST  +PP S   +S P + N  KS
Sbjct: 72  LSTNGAPPRSTPPLSTPSNSNATKS 96


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 381 LSTPISPPISHIKVSNPKSENVNKS 455
           LST  +PP S   +S P + N  KS
Sbjct: 116 LSTNGAPPRSTPPLSTPSNSNATKS 140


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 381 LSTPISPPISHIKVSNPKSENVNKS 455
           LST  +PP S   +S P + N  KS
Sbjct: 116 LSTNGAPPRSTPPLSTPSNSNATKS 140


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 500 KLHWCFRFEKNCFF 459
           K H+C     NCFF
Sbjct: 112 KSHYCLFVASNCFF 125


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 500 KLHWCFRFEKNCFF 459
           K H+C     NCFF
Sbjct: 112 KSHYCLFVASNCFF 125


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 25  GQVLPKRVYLCYNSLPVDLYIYPTI 99
           GQ   + V  CY  + +D ++YP +
Sbjct: 143 GQRSCQVVIQCYLEIKIDEHLYPVV 167


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = +3

Query: 588 HSLQNLSTRDLILTLMNFLLQSSQVISEHSLPSNTATL 701
           +S+ ++ +RD+ +  +      ++V+SE+ +  NTA L
Sbjct: 105 NSVGSVHSRDVNVRAVVNQYYEAEVVSEYVIRGNTAVL 142


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 621 ILTLMNFLLQSSQVISEHSLPSNTATLLT 707
           ++T +  LLQ    I E + P+N+ T+ T
Sbjct: 404 MVTYLVVLLQFQISIPEEASPTNSTTITT 432


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,189
Number of Sequences: 336
Number of extensions: 4454
Number of successful extensions: 24
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24617054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)