Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_P04
(888 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0690 + 26303733-26306540 33 0.30
09_06_0087 + 20771329-20771450,20771462-20771771,20771893-207726... 30 2.1
04_03_0795 - 19704354-19704464,19705152-19705214,19705298-197053... 30 2.1
05_07_0236 - 28582157-28582552,28582639-28582911,28583324-285835... 30 2.8
05_01_0148 - 985745-986180,986290-986385,986498-986694,986824-98... 29 3.7
03_02_0609 - 9823120-9823573,9823903-9824102,9824240-9824335,982... 29 3.7
12_02_0814 - 23410278-23411854,23411933-23412166,23412688-234127... 29 4.9
09_04_0497 - 18096299-18096496,18096586-18096675,18096809-180969... 29 6.5
08_02_1073 - 24117834-24118037,24118122-24118211,24118299-241184... 29 6.5
01_05_0067 - 17799260-17799615,17799736-17800134,17800400-17800412 28 8.6
>11_06_0690 + 26303733-26306540
Length = 935
Score = 33.1 bits (72), Expect = 0.30
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 100 QCFQCCRYGHIKSQCRSSPRLF*MW 174
+CF C GH+K+ C+ +PR + W
Sbjct: 93 RCFCCLGLGHLKADCKGAPRCYRCW 117
>09_06_0087 +
20771329-20771450,20771462-20771771,20771893-20772672,
20772854-20774002
Length = 786
Score = 30.3 bits (65), Expect = 2.1
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +1
Query: 100 QCFQCCRYGHIKSQCRSSPRLF*MW 174
+CF+C GH+K+ C P + W
Sbjct: 70 RCFRCLGLGHLKASCSQPPTCYRCW 94
>04_03_0795 -
19704354-19704464,19705152-19705214,19705298-19705378,
19705468-19705623,19705711-19705785,19706477-19706587,
19707206-19707304,19707453-19707546,19707779-19707838,
19709262-19709334,19711448-19711490,19711533-19711606,
19711985-19712075,19712170-19712214,19712533-19712589,
19713440-19713544,19713817-19713932,19714625-19714634,
19714810-19714920,19715502-19715594,19715664-19715690,
19715736-19715798,19716326-19716451,19716812-19716949,
19717164-19717832,19717949-19718123,19718269-19718450
Length = 1015
Score = 30.3 bits (65), Expect = 2.1
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +1
Query: 382 CPLQYLLLYHILKFQIQSLKMSINLTKKQFFSNLKH 489
C L++LLL+ +L+F+++ L + T+K + +H
Sbjct: 378 CTLRWLLLHRMLEFEVKELHAELLKTRKSMWYEKRH 413
>05_07_0236 -
28582157-28582552,28582639-28582911,28583324-28583560,
28583653-28583694,28583782-28583964,28584393-28584524,
28585605-28586057
Length = 571
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 381 LSTPISPPISHIKVSNPKSENVNKSY 458
LSTP PPIS +++ P NV Y
Sbjct: 543 LSTPTIPPISCLQIGKPSGNNVMSDY 568
>05_01_0148 -
985745-986180,986290-986385,986498-986694,986824-986919,
987020-987059,987751-987857
Length = 323
Score = 29.5 bits (63), Expect = 3.7
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 100 QCFQCCRYGHIKSQCRSSPR 159
+C++C GHI+ C++SPR
Sbjct: 125 KCYRCGERGHIERNCQNSPR 144
>03_02_0609 -
9823120-9823573,9823903-9824102,9824240-9824335,
9824454-9824567,9824711-9824774,9825206-9825312
Length = 344
Score = 29.5 bits (63), Expect = 3.7
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 100 QCFQCCRYGHIKSQCRSSPR 159
+C++C GHI+ C++SPR
Sbjct: 172 KCYRCGERGHIERNCQNSPR 191
>12_02_0814 -
23410278-23411854,23411933-23412166,23412688-23412725,
23412872-23412948
Length = 641
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 103 CFQCCRYGHIKSQCRSSPRLF*MW 174
CF C GH KS C S R + W
Sbjct: 132 CFNCLGLGHQKSACPGSTRCYNCW 155
>09_04_0497 -
18096299-18096496,18096586-18096675,18096809-18096914,
18097005-18097179,18097263-18097365,18097458-18097712,
18097791-18097868,18097986-18098078,18098179-18098319,
18098406-18098510,18098658-18098738,18098825-18098866,
18098966-18099082,18099208-18099351,18099485-18099568,
18099683-18099803,18099863-18099988,18100106-18100179,
18100388-18100657
Length = 800
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 369 YSDVLSTPISPPISHIKVSNPKSENVNKSYKKTVFL 476
+ VL P P+S+ ++ NPK++N+ + Y K VF+
Sbjct: 393 FRSVLYIPGMAPLSNEEIMNPKTKNI-RLYVKRVFI 427
>08_02_1073 -
24117834-24118037,24118122-24118211,24118299-24118404,
24118477-24118648,24118737-24118839,24118927-24119181,
24119259-24119336,24119449-24119541,24119660-24119800,
24119882-24119986,24120135-24120212,24120297-24120341,
24120463-24120579,24120685-24120828,24120934-24121017,
24121139-24121232,24121322-24121447,24121585-24121658,
24121870-24122098,24123124-24123611,24123702-24123749,
24123841-24124077,24124368-24124404,24125011-24125018
Length = 1051
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 369 YSDVLSTPISPPISHIKVSNPKSENVNKSYKKTVFL 476
+ VL P P+S+ ++ NPK++N+ + Y K VF+
Sbjct: 643 FRSVLYIPGMAPLSNEEIMNPKTKNI-RLYVKRVFI 677
>01_05_0067 - 17799260-17799615,17799736-17800134,17800400-17800412
Length = 255
Score = 28.3 bits (60), Expect = 8.6
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 97 IQCFQCCRYGHIKSQC 144
+QCF+C +GHI +C
Sbjct: 93 VQCFRCDEWGHISREC 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,297,379
Number of Sequences: 37544
Number of extensions: 421923
Number of successful extensions: 1107
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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