Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_P04
         (888 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022976-7|AAC69086.1|  441|Caenorhabditis elegans Hypothetical ...    31   1.1  
AF016675-4|AAB66137.1|  356|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z82078-6|CAB04946.1|  257|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum...    29   4.4  
AL117206-11|CAB60453.3| 1237|Caenorhabditis elegans Hypothetical...    29   4.4  
Z81052-1|CAB02872.1| 1175|Caenorhabditis elegans Hypothetical pr...    29   5.9  
Z79755-8|CAB02113.1|  270|Caenorhabditis elegans Hypothetical pr...    29   5.9  
AF237467-1|AAF60326.1| 1175|Caenorhabditis elegans pyruvate carb...    29   5.9  
AF169201-1|AAF01678.1|  270|Caenorhabditis elegans CES-1 protein.      29   5.9  
AC024880-2|AAF60914.4|  665|Caenorhabditis elegans Hypothetical ...    29   5.9  
AC024880-1|AAR12985.1|  634|Caenorhabditis elegans Hypothetical ...    29   5.9  
AC090999-25|AAK26157.2|  921|Caenorhabditis elegans Hypothetical...    28   7.8  

>AF022976-7|AAC69086.1|  441|Caenorhabditis elegans Hypothetical
           protein R11G11.12 protein.
          Length = 441

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +3

Query: 234 CSGSHFAT--SRKCPEFFRQKSIKESMAKSC 320
           C G+HF T   R C  FFR+ +  +S  K C
Sbjct: 12  CHGTHFGTICCRACAAFFRRTAFSKSFCKPC 42


>AF016675-4|AAB66137.1|  356|Caenorhabditis elegans Hypothetical
           protein T27B7.5 protein.
          Length = 356

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 10/70 (14%)
 Frame = +3

Query: 156 PXVLNVVMATQGDSCNIEEENV----ICCLCS----GSHFA--TSRKCPEFFRQKSIKES 305
           P VL+ +++    S N ++ N+    +C +C     G+HF   T R C  FFR+ +  + 
Sbjct: 31  PPVLHFLISLDFFSNNSKKPNMDPGLVCRICELQADGTHFGVVTCRACAVFFRRSTTSKW 90

Query: 306 MAKSCLSYAE 335
           + + C++ +E
Sbjct: 91  IKRKCMARSE 100


>Z82078-6|CAB04946.1|  257|Caenorhabditis elegans Hypothetical
           protein W09D6.5 protein.
          Length = 257

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 378 VLSTPISPPISHIKVSNPKSENVNKSYKKTVFLKPKTPVQLS 503
           ++ T IS P S +K  +P+S    KS KK+     K+PV  S
Sbjct: 60  LMDTVISAPPSSLKEKSPQSNRQTKSNKKSSPPPRKSPVMTS 101


>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
           homolog protein 1 protein.
          Length = 1722

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +3

Query: 192 DSCNIEEENVICCLCSGSHFATSRKCPEFFRQKSIKESMAKSC 320
           + C  E    +C L +G+   T  +CP  F     KE  A+ C
Sbjct: 244 NECICENPAHVCSLVNGTSRTTQCECPSGFMGADCKELQARPC 286


>AL117206-11|CAB60453.3| 1237|Caenorhabditis elegans Hypothetical
           protein Y67A10A.3 protein.
          Length = 1237

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 193 TVVILKRKMSYVAFVLDHISPLAANALN 276
           T V +K     V+F +DH+S LA NA+N
Sbjct: 88  TDVHVKSTSKLVSFTVDHVSKLAENAIN 115


>Z81052-1|CAB02872.1| 1175|Caenorhabditis elegans Hypothetical
           protein D2023.2 protein.
          Length = 1175

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +3

Query: 270 PEFFRQKSIKESMAKSCLSYAEALKLHPPVGRSYSDVLSTPISPPISHI 416
           PE F+ K   ++ A+  L+Y   +K++ P     +D+    +SPPI +I
Sbjct: 480 PELFQFKP-SQNRAQKLLNYLGEVKVNGPTTPLATDLKPAVVSPPIPYI 527


>Z79755-8|CAB02113.1|  270|Caenorhabditis elegans Hypothetical
           protein F43G9.11 protein.
          Length = 270

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = +3

Query: 423 SNPKSENVNKSYKKTVFLKPKTPVQLSKGFDKIAHAKLTNEYDI---PLPTVGT-GYDHH 590
           S+  SEN+ KS   +V       +       K+   +L N+ D+   P PT  T GY   
Sbjct: 55  SSTSSENLKKS-PSSVQNTSVFSIDNILNSQKVPKLELENDEDVSSSPSPTCSTTGYTLD 113

Query: 591 SLQNLSTRDL 620
           SLQNL  R L
Sbjct: 114 SLQNLDRRSL 123


>AF237467-1|AAF60326.1| 1175|Caenorhabditis elegans pyruvate
           carboxylase protein.
          Length = 1175

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +3

Query: 270 PEFFRQKSIKESMAKSCLSYAEALKLHPPVGRSYSDVLSTPISPPISHI 416
           PE F+ K   ++ A+  L+Y   +K++ P     +D+    +SPPI +I
Sbjct: 480 PELFQFKP-SQNRAQKLLNYLGEVKVNGPTTPLATDLKPAVVSPPIPYI 527


>AF169201-1|AAF01678.1|  270|Caenorhabditis elegans CES-1 protein.
          Length = 270

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = +3

Query: 423 SNPKSENVNKSYKKTVFLKPKTPVQLSKGFDKIAHAKLTNEYDI---PLPTVGT-GYDHH 590
           S+  SEN+ KS   +V       +       K+   +L N+ D+   P PT  T GY   
Sbjct: 55  SSTSSENLKKS-PSSVQNTSVFSIDNILNSQKVPKLELENDEDVSSSPSPTCSTTGYTLD 113

Query: 591 SLQNLSTRDL 620
           SLQNL  R L
Sbjct: 114 SLQNLDRRSL 123


>AC024880-2|AAF60914.4|  665|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.2a protein.
          Length = 665

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
 Frame = +3

Query: 372 SDVLSTPISPPISHIKVSN-PKSENVNKSYKKTVFLKPKTPVQLSKGFDKIA 524
           S  +ST  S P++   +++ PK+ENV+++Y + ++ + +T    S+ F K A
Sbjct: 268 SPTVSTSTSEPMAAAPITDAPKTENVSRNYTRIIWDR-RTVRSSSEKFSKFA 318


>AC024880-1|AAR12985.1|  634|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.2b protein.
          Length = 634

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
 Frame = +3

Query: 372 SDVLSTPISPPISHIKVSN-PKSENVNKSYKKTVFLKPKTPVQLSKGFDKIA 524
           S  +ST  S P++   +++ PK+ENV+++Y + ++ + +T    S+ F K A
Sbjct: 218 SPTVSTSTSEPMAAAPITDAPKTENVSRNYTRIIWDR-RTVRSSSEKFSKFA 268


>AC090999-25|AAK26157.2|  921|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.18 protein.
          Length = 921

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/32 (56%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 345 LHPPVGR-SYSDVLSTPISPPISHIKVSNPKS 437
           LH P+G  SYS+VLS PIS PI   +  NP S
Sbjct: 250 LHKPLGFISYSEVLS-PISTPIQIYQDFNPIS 280


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,356,054
Number of Sequences: 27780
Number of extensions: 404819
Number of successful extensions: 1079
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)