Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_O23
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...   135   5e-33
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...   133   2e-32
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    30   0.29 
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    27   2.7  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    27   2.7  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    27   3.6  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    26   4.7  
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    26   6.3  
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    25   8.3  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   8.3  
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   8.3  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    25   8.3  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    25   8.3  

>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score =  135 bits (327), Expect = 5e-33
 Identities = 70/133 (52%), Positives = 81/133 (60%)
 Frame = -3

Query: 656 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 477
           SKVS   +   V  +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL  +PRP 
Sbjct: 2   SKVSPANIRSSVETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61

Query: 476 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPR 297
           M +C+LGD    D AK   V  M                          ASE LIKQIPR
Sbjct: 62  MSICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPR 121

Query: 296 LLGPGLNKAGKXP 258
           LLGPGL+KAGK P
Sbjct: 122 LLGPGLSKAGKFP 134



 Score = 86.2 bits (204), Expect = 4e-18
 Identities = 42/68 (61%), Positives = 51/68 (75%)
 Frame = -1

Query: 277 TKLVNXPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSIN 98
           +K    P  +SH + +  KI EVK TIKFQ+KKVLCL VAVGHVDM  ++LA N+ L+IN
Sbjct: 128 SKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVLCLGVAVGHVDMAEEQLAANLSLAIN 187

Query: 97  FLVSLLKK 74
           FLVSLLKK
Sbjct: 188 FLVSLLKK 195


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score =  133 bits (322), Expect = 2e-32
 Identities = 70/133 (52%), Positives = 82/133 (61%)
 Frame = -3

Query: 656 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 477
           SKVS  ++   V  +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL  +PRP 
Sbjct: 2   SKVSVASVRSNVEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61

Query: 476 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPR 297
           M +C+LGD    D AK   V  M                          ASE LIKQIPR
Sbjct: 62  MAICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPR 121

Query: 296 LLGPGLNKAGKXP 258
           LLGPGL+KAGK P
Sbjct: 122 LLGPGLSKAGKFP 134



 Score = 83.4 bits (197), Expect = 3e-17
 Identities = 39/68 (57%), Positives = 51/68 (75%)
 Frame = -1

Query: 277 TKLVNXPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSIN 98
           +K    P  +SH + +  KI EVK TIKFQ+KKVLCL VAVGHV+M+ ++L  N+ L++N
Sbjct: 128 SKAGKFPSPVSHADDLYGKITEVKSTIKFQLKKVLCLGVAVGHVEMSEEQLIANIMLAVN 187

Query: 97  FLVSLLKK 74
           FLVSLLKK
Sbjct: 188 FLVSLLKK 195


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
 Frame = -3

Query: 674  LTNKMSSKVSRDTLYE---CVNAVLQSSKDKKRNFLETVELQIGLKNYD-PQKDKRFSG 510
            +T+K++  V ++  Y    C N +++SS   K NF +TV +     +YD P+ D  + G
Sbjct: 920  VTSKLNDLVIKEFTYPSSLCDNVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978



 Score = 27.1 bits (57), Expect = 2.7
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
 Frame = -1

Query: 229  TQKIDEVKGTIKFQMKK----VLCLSVAVGHVDMTPDEL----AQNVHLSINFLVSLLKK 74
            T++I+   GT+          V  LS+A+G+++  P  L      N H+S+  L  L+K 
Sbjct: 2682 TERINNTDGTVVSSHNPFVFFVNVLSMAIGNINDAPVRLNALLMDNAHVSLRRLFELVKN 2741

Query: 73   HLAR 62
            H ++
Sbjct: 2742 HYSQ 2745


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 129 SSGVMSTWPTATERHNTFFIWNLMVPLTSSIFC 227
           S+G   ++ T T R   F  WN+++   +++FC
Sbjct: 236 STGYKGSYLTVTNRDAVFVGWNIVIGGFATVFC 268


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -1

Query: 238 ESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFL 92
           E + +++    G   F         +  GHV  T  ELA+NV   + F+
Sbjct: 176 EQLKREVVSAYGATYFNSAPCSSFMIKCGHVSNTSTELAENVESILQFV 224


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -3

Query: 188 NEEGVVSFCSSWPCGHDS**ACSECASFHQLPCV 87
           NE      C  W C  D    C++C  ++ + CV
Sbjct: 257 NEPSNCKVCKKW-CAFDFSVQCADCKKYYHMDCV 289


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 22/70 (31%), Positives = 33/70 (47%)
 Frame = +2

Query: 434 PRHNAAGLQERKLAFSAAVCILALQCRRNACPSVGHSSSDQFEALQSPKSYVSCP*RIEE 613
           P H  A LQE   A  AA+    L+ ++NA    G +S D  +AL  P    S      +
Sbjct: 317 PEHELAALQEHNEAHDAAMRQYELERQQNAM-LPGLASIDGLQAL--PHLDFSDSAVTNQ 373

Query: 614 RHSRTRRACH 643
            HS+++ + H
Sbjct: 374 SHSQSQNSLH 383


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 121 QNVHLSINFLVSLLKKHLARMSDHCHDEINDGTTLR 14
           Q +H  IN+    LK+ L +  D   ++ N G  +R
Sbjct: 73  QPIHKQINYETDKLKERLGKSIDKFQEQWNSGKVVR 108


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 69  RCFLSSDTRKLMERCTF*ASSSGVMSTWPTATERHNT 179
           +CF  SD +KL +RC    SS      WP   + ++T
Sbjct: 143 KCFHRSDVQKLSKRCDILFSSE-----WPEDVQENST 174


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 7/27 (25%), Positives = 19/27 (70%)
 Frame = +2

Query: 116  ILSKLIRSHVHMANCYRKTQHLLHLEL 196
            +L K++    + ++C+++ +HL+H+ L
Sbjct: 1047 VLMKVVGVFANYSDCFQRNRHLVHMVL 1073


>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -3

Query: 665 KMSSKVSRDTLYECVNAVLQSSKDKKRNFLETV 567
           K   K   DT+ E   A LQSS DK  NF +T+
Sbjct: 215 KRPDKSPFDTMTE---ATLQSSSDKSENFTKTL 244


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 348 FGQFLDKLFVLIQFFQSLSIHTWHIQGFSLVTML 449
           +G+F+ +LF LIQ  +   +  W +   + VT++
Sbjct: 385 YGEFVMRLFFLIQKLRKKYLSRWGVLDAAFVTVI 418


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -3

Query: 623 VNAVLQSSKDKKRNFLETV 567
           +NA+L+ SK+KK N +E++
Sbjct: 370 INALLERSKEKKANVIESL 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,084,260
Number of Sequences: 5004
Number of extensions: 63038
Number of successful extensions: 210
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)