Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_O23
(724 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024200-4|AAF36008.1| 216|Caenorhabditis elegans Ribosomal pro... 151 4e-37
AJ270980-1|CAB65902.1| 186|Caenorhabditis elegans 60s ribosomal... 111 6e-25
AC024200-5|AAK66025.1| 155|Caenorhabditis elegans Ribosomal pro... 92 4e-19
AF099915-5|AAC68770.1| 118|Caenorhabditis elegans Hypothetical ... 29 3.4
AF039044-5|AAG24123.1| 164|Caenorhabditis elegans Hypothetical ... 29 4.4
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z70212-2|CAA94163.1| 430|Caenorhabditis elegans Hypothetical pr... 28 7.8
>AC024200-4|AAF36008.1| 216|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 1, isoform a protein.
Length = 216
Score = 151 bits (367), Expect = 4e-37
Identities = 75/133 (56%), Positives = 89/133 (66%)
Frame = -3
Query: 656 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 477
SKVSR++L E + VL+ S +K R F ET+ELQIGLKNYDPQKDKRFSG+++LK+IPRP
Sbjct: 2 SKVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPN 61
Query: 476 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPR 297
M+VCV GDQ H DEA ++P M ASESLIKQIPR
Sbjct: 62 MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 121
Query: 296 LLGPGLNKAGKXP 258
+LGPGLNKAGK P
Sbjct: 122 ILGPGLNKAGKFP 134
Score = 91.9 bits (218), Expect = 4e-19
Identities = 41/63 (65%), Positives = 52/63 (82%)
Frame = -1
Query: 259 PGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLL 80
P +++H ES+ K DE++ T+KFQMKKVLCLSVAVGHV +T +EL N+ LSINFLVSLL
Sbjct: 134 PSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLL 193
Query: 79 KKH 71
KK+
Sbjct: 194 KKN 196
>AJ270980-1|CAB65902.1| 186|Caenorhabditis elegans 60s ribosomal
protein L10A protein.
Length = 186
Score = 111 bits (266), Expect = 6e-25
Identities = 54/97 (55%), Positives = 62/97 (63%)
Frame = -3
Query: 548 KNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXX 369
KNYDPQKDKRFSG+++LK+IPRP M+VCV GDQ H DEA ++P M
Sbjct: 8 KNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKK 67
Query: 368 XXXXXXXXXXXXXASESLIKQIPRLLGPGLNKAGKXP 258
ASESLIKQIPR+LGPGLNKAGK P
Sbjct: 68 LIKKLAKSYDAFIASESLIKQIPRILGPGLNKAGKFP 104
Score = 91.9 bits (218), Expect = 4e-19
Identities = 41/63 (65%), Positives = 52/63 (82%)
Frame = -1
Query: 259 PGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLL 80
P +++H ES+ K DE++ T+KFQMKKVLCLSVAVGHV +T +EL N+ LSINFLVSLL
Sbjct: 104 PSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLL 163
Query: 79 KKH 71
KK+
Sbjct: 164 KKN 166
>AC024200-5|AAK66025.1| 155|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 1, isoform b protein.
Length = 155
Score = 91.9 bits (218), Expect = 4e-19
Identities = 41/63 (65%), Positives = 52/63 (82%)
Frame = -1
Query: 259 PGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLL 80
P +++H ES+ K DE++ T+KFQMKKVLCLSVAVGHV +T +EL N+ LSINFLVSLL
Sbjct: 73 PSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLL 132
Query: 79 KKH 71
KK+
Sbjct: 133 KKN 135
Score = 65.7 bits (153), Expect = 3e-11
Identities = 35/73 (47%), Positives = 39/73 (53%)
Frame = -3
Query: 476 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPR 297
M+VCV GDQ H DEA ++P M ASESLIKQIPR
Sbjct: 1 MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 60
Query: 296 LLGPGLNKAGKXP 258
+LGPGLNKAGK P
Sbjct: 61 ILGPGLNKAGKFP 73
>AF099915-5|AAC68770.1| 118|Caenorhabditis elegans Hypothetical
protein E02H9.4 protein.
Length = 118
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 599 KDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYI 489
K +K N E VEL +KNY P+ + R V+ KY+
Sbjct: 41 KGEKYNGNEKVELTTTVKNYKPKNNTRKWPAVEAKYL 77
>AF039044-5|AAG24123.1| 164|Caenorhabditis elegans Hypothetical
protein F48G7.7 protein.
Length = 164
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 58 SDHCHDEINDGTTLRDC 8
SD CHD+IN+ T + DC
Sbjct: 70 SDPCHDKINNATGVSDC 86
>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
F55H12.3 protein.
Length = 2972
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = -1
Query: 145 DMTPDELAQNVHLSINFLVSLLKKHLARMSDHCHDEINDGT 23
D+TP + ++ F+V L + + +++ C+D I +GT
Sbjct: 2196 DLTPSRFVGMISMTQLFIVRLTEAQIGQLAFDCYDTILNGT 2236
>Z70212-2|CAA94163.1| 430|Caenorhabditis elegans Hypothetical
protein R04D3.3 protein.
Length = 430
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -3
Query: 686 IGGSLTNKMSSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKR 519
+GGS + + +D+L E ++ + +S K K LET+ Q G K D +R
Sbjct: 189 VGGSSMEDVLTSDEKDSLSEAISNLPKSPKSKTDRDLETL-AQSGSKTRDSHSRRR 243
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,456,221
Number of Sequences: 27780
Number of extensions: 371304
Number of successful extensions: 951
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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