Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_O22
         (820 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    28   1.4  
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    28   1.8  
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb...    28   1.8  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   2.4  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    27   4.2  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    26   5.6  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   9.8  

>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 142 NGKTVPLTSVDDDVIAQMTPTEKETYIQIYQEYYSH 35
           N K + L  +++D I    P+E E  + I ++Y+ H
Sbjct: 591 NKKIMKLQKIEEDKIKSYIPSESEEPLVIDEDYFGH 626


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -1

Query: 703 GIKLAPEILEPE-PVDINTIRGLTSKQSALRPGGEQWS 593
           G+KL+ +I++   P+D+   R +TS  + L    E+WS
Sbjct: 106 GLKLSKKIVDASTPIDLKRKRAVTSLSTGLLSKREKWS 143


>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = -1

Query: 634 SKQSALRPGGEQWSGEATRNQGMLVEE 554
           SKQ  LR  G  WSG+A RNQ +L  E
Sbjct: 25  SKQ--LRHRGPDWSGKAIRNQTILCHE 49


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 9/20 (45%), Positives = 17/20 (85%)
 Frame = -1

Query: 103 VIAQMTPTEKETYIQIYQEY 44
           V+A+M+P +K TY+++ Q+Y
Sbjct: 810 VLARMSPFDKATYVELCQKY 829


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/38 (26%), Positives = 16/38 (42%)
 Frame = -2

Query: 753 SSMSSWKRFTYYCERSKASNWLQRYWNQNRSILTQYED 640
           + M+ W  + Y C   +A  WL+   N     L  + D
Sbjct: 53  NQMNDWLAYGYLCSVHEAKKWLEEETNNEYQNLDDFVD 90


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 346  MSVLLAHEKQPSAGNPVSNAVK 281
            + ++LAHEK P AG   S+ +K
Sbjct: 1180 LQMILAHEKNPLAGEDSSDEIK 1201


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -2

Query: 768 DYYWPSSMSSWKRF--TYYCERSKASNWLQRYWNQNR 664
           D +W +  +  +R   +Y   RS+A+  +Q+ WN+N+
Sbjct: 720 DKFWDTMATRIQRAWRSYVRRRSEAAACIQKLWNRNK 756


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,682,439
Number of Sequences: 5004
Number of extensions: 44741
Number of successful extensions: 157
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)