Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_O22
         (820 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1416 - 37174913-37175006,37175299-37175441,37175932-371760...    33   0.27 
08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-24...    28   7.8  
01_06_1130 + 34740301-34740551,34740657-34741763,34741865-34742168     28   7.8  

>01_06_1416 -
           37174913-37175006,37175299-37175441,37175932-37176027,
           37177125-37177364,37177456-37177812,37178020-37178097,
           37178387-37178434,37179406-37179675,37179954-37180054,
           37180452-37180605
          Length = 526

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = -2

Query: 723 YYCERSKASNWLQRYWNQNRSILTQYED*RQSSPHCVRAASNGRVRRRATKACWSRR-HE 547
           Y C R KA N  Q+  +Q R ILT     RQ++  C  +      R RA    WS R  E
Sbjct: 442 YTCMRKKADNLRQQTLHQLRRILTT----RQAA-RCFLSIGEYYRRLRALSNLWSSRPRE 496

Query: 546 LTSPSETTSPRGTPARYARSGP 481
               +E+ SP GT  +   + P
Sbjct: 497 NFIGTESVSPTGTELQPMHNQP 518


>08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-246796,
            246893-247240,247882-248721,248786-248832,249470-249596,
            249672-249836,249973-251370,251453-251713,251802-252161
          Length = 1539

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -1

Query: 118  SVDDD-VIAQMTPTEKETYIQIYQEYYSHMY 29
            +VDD  +I Q+  TE E++I+   +Y+ H+Y
Sbjct: 1284 TVDDRFIIKQIKKTEFESFIKFAPDYFKHVY 1314


>01_06_1130 + 34740301-34740551,34740657-34741763,34741865-34742168
          Length = 553

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 73  PSQWASSVXXXXXXHWSMAPSYRSP*PRARYH 168
           PS WA S+       W++  S   P P+  YH
Sbjct: 313 PSGWAWSINQWRSFRWNLTASAARPNPQGSYH 344


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,700,234
Number of Sequences: 37544
Number of extensions: 332916
Number of successful extensions: 1148
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)