Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_O22
         (820 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82287-4|CAB05314.1|  433|Caenorhabditis elegans Hypothetical pr...    44   2e-04
Y08816-1|CAA70050.2|  433|Caenorhabditis elegans TFIIE-alpha pro...    44   2e-04
Z50070-2|CAB54253.1| 1069|Caenorhabditis elegans Hypothetical pr...    29   5.3  
Z50070-1|CAA90399.1| 1105|Caenorhabditis elegans Hypothetical pr...    29   5.3  

>Z82287-4|CAB05314.1|  433|Caenorhabditis elegans Hypothetical
           protein ZK550.4 protein.
          Length = 433

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 11/145 (7%)
 Frame = -1

Query: 820 CSAVVDEDMSAXPKKDSRLLLAKFNEQLETLYILLREVEGIKLAPEILEPE---PVDINT 650
           C   V  D +  P + +R  +A+FNEQ+  L+  +  + GI+LAP +LEP+    ++ + 
Sbjct: 170 CHGDVLADETVVPSRTTRTAVARFNEQMTPLFSHICALNGIQLAPHLLEPDITKYLEDDK 229

Query: 649 IRGLTSKQSALRPGGE-----QWSGEATRNQGML-VEETRVDVTIGDDKPARDAGALRKE 488
              L  +Q     GG      Q  G A   Q +  +     D    D     + G + + 
Sbjct: 230 ELQLQQQQMDFTSGGGGGGRIQLGGVAHSYQNIASINYQNGDAVFVDLNADINKGPVEEA 289

Query: 487 R--PVWMVESTIASNEQSDSAHSTD 419
           +  P W+ ++ I   E S + H  D
Sbjct: 290 KIMPEWLKDNAIGGGEASHNEHVLD 314


>Y08816-1|CAA70050.2|  433|Caenorhabditis elegans TFIIE-alpha
           protein protein.
          Length = 433

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 11/145 (7%)
 Frame = -1

Query: 820 CSAVVDEDMSAXPKKDSRLLLAKFNEQLETLYILLREVEGIKLAPEILEPE---PVDINT 650
           C   V  D +  P + +R  +A+FNEQ+  L+  +  + GI+LAP +LEP+    ++ + 
Sbjct: 170 CHGDVLADETVVPSRTTRTAVARFNEQMTPLFSHICALNGIQLAPHLLEPDITKYLEDDK 229

Query: 649 IRGLTSKQSALRPGGE-----QWSGEATRNQGML-VEETRVDVTIGDDKPARDAGALRKE 488
              L  +Q     GG      Q  G A   Q +  +     D    D     + G + + 
Sbjct: 230 ELQLQQQQMDFTSGGGGGGRIQLGGVAHSYQNIASINYQNGDAVFVDLNADINKGPVEEA 289

Query: 487 R--PVWMVESTIASNEQSDSAHSTD 419
           +  P W+ ++ I   E S + H  D
Sbjct: 290 KIMPEWLKDNAIGGGEASHNEHVLD 314


>Z50070-2|CAB54253.1| 1069|Caenorhabditis elegans Hypothetical protein
            F43G6.1b protein.
          Length = 1069

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = -1

Query: 682  ILEPEPVDINTIRGLTSKQSALRPGGEQWSGEATRNQGMLVEETRVDVTI 533
            IL  + +++NTI     ++  +      W+  +T+   +L +E RV+V +
Sbjct: 981  ILNSDELEVNTIDSYQGREKRVIIWSLTWTNNSTKKSELLKDERRVNVAL 1030


>Z50070-1|CAA90399.1| 1105|Caenorhabditis elegans Hypothetical protein
            F43G6.1a protein.
          Length = 1105

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = -1

Query: 682  ILEPEPVDINTIRGLTSKQSALRPGGEQWSGEATRNQGMLVEETRVDVTI 533
            IL  + +++NTI     ++  +      W+  +T+   +L +E RV+V +
Sbjct: 1017 ILNSDELEVNTIDSYQGREKRVIIWSLTWTNNSTKKSELLKDERRVNVAL 1066


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,408,256
Number of Sequences: 27780
Number of extensions: 271533
Number of successful extensions: 1089
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)