Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_O22
         (820 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   2.6  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   3.4  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 15/63 (23%), Positives = 25/63 (39%)
 Frame = -1

Query: 667 PVDINTIRGLTSKQSALRPGGEQWSGEATRNQGMLVEETRVDVTIGDDKPARDAGALRKE 488
           P  +N I G T K   L      WS    ++   +V   ++ +   D     D+G + + 
Sbjct: 88  PSTLNVISGKTGKGGRLLKPYPDWSFAEFKDCSKIVSAFKIAIDKFDRLWVLDSGLVNRT 147

Query: 487 RPV 479
            PV
Sbjct: 148 VPV 150


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 2/112 (1%)
 Frame = -1

Query: 808 VDEDMSAXPKKDSRLLLAKFNEQLETLYILLREVEGIKLAPEILEPE--PVDINTIRGLT 635
           +D D  +  K+ + +    +N  +   Y+L  +  G K    I++    P  +N I   T
Sbjct: 38  IDYDFGSDEKRQAAIQSGDYNYTMN--YLLDTDQWGDKTFVIIMKFNGVPSSLNVITNKT 95

Query: 634 SKQSALRPGGEQWSGEATRNQGMLVEETRVDVTIGDDKPARDAGALRKERPV 479
                L      W+     N   +    ++++ + D     D+G +   R V
Sbjct: 96  GNGGPLLAPYPDWTWAKNENCSGITSAYKIEIDMCDRLWVLDSGLINNVRSV 147


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,279
Number of Sequences: 438
Number of extensions: 3340
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)