Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_O21
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      31   0.18 
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    29   0.71 
SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr ...    29   0.94 
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    29   0.94 
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   3.8  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 67  FYCYYFYKLYISIVSFLYMSLSFHLLY 147
           F+C++FY    S  SFL+ SL F+  +
Sbjct: 107 FFCFFFYFSLFSFFSFLFTSLHFNFFF 133


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = +1

Query: 31   YIISDIYFILSIFYCYYFYKLYISIVS----FLYMSLSFHLLYAVRQFI 165
            YI+  IY + S+F+ +Y Y++  S+ S    FL    SF LL  +  FI
Sbjct: 1965 YIVGSIYTVSSVFW-WYLYRMLPSVASLSLPFLLYCASF-LLIGISSFI 2011


>SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +1

Query: 58  LSIFYCYYFYKLYISIVSFLYMSLSFHLLYAVRQFIAYKEANNRPFTYKNHHI 216
           ++I+Y   F  L + IVSF+ +SL   L   VR+ I     +N PF  +  H+
Sbjct: 1   MTIYYMIVFMLLMVEIVSFVILSLPLPL--KVRRAI-LNAISNSPFAGRVKHV 50


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 128 YLSIYCMLFDNLLPTKKRIIGHSPIKTTIST 220
           YLS+Y ++ DN L TK  I   S +K+ +ST
Sbjct: 340 YLSLYDLIHDNNLFTKASISTTSLVKSNVST 370


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 10   FLNAXFTYIISDIYFILSIFYCYYFYKLYISIVSFLYMSLSFHLLY 147
            +L   F  I   +   +S  Y YYF    + IVS L M LS +L +
Sbjct: 1801 YLKRKFRSIKDFLKHTVSYLYSYYFEDYELEIVSTLTMFLSNNLTW 1846


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,783,616
Number of Sequences: 5004
Number of extensions: 55924
Number of successful extensions: 173
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)