Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_O15
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      29   0.66 
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa...    29   0.66 
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    28   1.5  
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    26   6.1  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    26   8.1  

>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 745 WTVGTTRP*HRLHSRVPDHARCSAAATLASRL 650
           +T  T RP  RLH+ +  +A  SA+  LASRL
Sbjct: 190 YTTETIRPHVRLHNSLSTNAALSASVVLASRL 221


>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +1

Query: 586 SSVKNRKIELSAVDEM--LATRSPSGWR-GLRLLSTGHGRELVSGGG 717
           +S +NRK+  S V  +  + T   S WR GLR ++ GH   LV  GG
Sbjct: 60  TSQENRKLSPSEVGPLSIVDTSDSSWWRTGLREIARGHVAALVLAGG 106


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 152 KSKPFYYYACLICMCKNVY 208
           ++ PF YY CL C CK+++
Sbjct: 542 RADPFAYYYCLQCECKSLH 560


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 630 DVSDAVPKRLARVAAAEHRAWSGTRE 707
           +V    PK+LAR A  ++ AWS  +E
Sbjct: 499 EVEKTEPKKLARPAKIKNEAWSKQKE 524


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 248 DISCYSNSYLWIFYKHFCTCILNMHNNKKVL 156
           D + Y+NS  W+  K+F    L  H N K++
Sbjct: 30  DSTAYNNSLDWLRSKNFKVSCLLKHFNSKII 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,371,550
Number of Sequences: 5004
Number of extensions: 69030
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)