Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_O15
(879 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M64098-1|AAA35962.1| 1268|Homo sapiens high density lipoprotein ... 39 0.021
BC113120-1|AAI13121.1| 589|Homo sapiens HDLBP protein protein. 39 0.021
BC014305-1|AAH14305.2| 898|Homo sapiens HDLBP protein protein. 39 0.021
BC001179-1|AAH01179.1| 1268|Homo sapiens high density lipoprotei... 39 0.021
AK127833-1|BAC87153.1| 847|Homo sapiens protein ( Homo sapiens ... 39 0.021
AC104841-2|AAY14717.1| 1268|Homo sapiens unknown protein. 39 0.021
U94703-1|AAC51321.1| 372|Homo sapiens mitochondrial DNA polymer... 32 3.2
BC099650-1|AAH99650.1| 907|Homo sapiens leucine-rich repeat-con... 32 3.2
BC096326-1|AAH96326.1| 883|Homo sapiens LGR5 protein protein. 32 3.2
BC096325-1|AAH96325.1| 883|Homo sapiens LGR5 protein protein. 32 3.2
BC096324-1|AAH96324.1| 907|Homo sapiens leucine-rich repeat-con... 32 3.2
AF062006-1|AAC28019.1| 907|Homo sapiens orphan G protein-couple... 32 3.2
AF061444-1|AAC77911.1| 907|Homo sapiens G protein-coupled recep... 32 3.2
AK097864-1|BAC05188.1| 193|Homo sapiens protein ( Homo sapiens ... 31 5.5
Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen... 30 9.6
X98705-1|CAA67261.1| 1069|Homo sapiens collagen type I alpha 1 p... 30 9.6
K01228-1|AAA51995.1| 1040|Homo sapiens COL1A1 protein. 30 9.6
BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha... 30 9.6
AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen... 30 9.6
AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain ... 30 9.6
>M64098-1|AAA35962.1| 1268|Homo sapiens high density lipoprotein
binding protein protein.
Length = 1268
Score = 39.1 bits (87), Expect = 0.021
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = -1
Query: 873 EEYLXDVADRYQPPAAPSLGDFGAVLGAENPNAPAGPGFVVKGGPW----EQRAPDTAST 706
EEYL DV D + +L + E AP+ GFVV+ PW ++APD +S+
Sbjct: 1195 EEYLADVVD------SEALQVYMKPPAHEEAKAPSR-GFVVRDAPWTASSSEKAPDMSSS 1247
Query: 705 HEFPTMPGXXXXXXXXXAWGPRR 637
EFP+ WGP+R
Sbjct: 1248 EEFPSF--GAQVAPKTLPWGPKR 1268
>BC113120-1|AAI13121.1| 589|Homo sapiens HDLBP protein protein.
Length = 589
Score = 39.1 bits (87), Expect = 0.021
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = -1
Query: 873 EEYLXDVADRYQPPAAPSLGDFGAVLGAENPNAPAGPGFVVKGGPW----EQRAPDTAST 706
EEYL DV D + +L + E AP+ GFVV+ PW ++APD +S+
Sbjct: 516 EEYLADVVD------SEALQVYMKPPAHEEAKAPSR-GFVVRDAPWTASSSEKAPDMSSS 568
Query: 705 HEFPTMPGXXXXXXXXXAWGPRR 637
EFP+ WGP+R
Sbjct: 569 EEFPSF--GAQVAPKTLPWGPKR 589
>BC014305-1|AAH14305.2| 898|Homo sapiens HDLBP protein protein.
Length = 898
Score = 39.1 bits (87), Expect = 0.021
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = -1
Query: 873 EEYLXDVADRYQPPAAPSLGDFGAVLGAENPNAPAGPGFVVKGGPW----EQRAPDTAST 706
EEYL DV D + +L + E AP+ GFVV+ PW ++APD +S+
Sbjct: 825 EEYLADVVD------SEALQVYMKPPAHEEAKAPSR-GFVVRDAPWTASSSEKAPDMSSS 877
Query: 705 HEFPTMPGXXXXXXXXXAWGPRR 637
EFP+ WGP+R
Sbjct: 878 EEFPSF--GAQVAPKTLPWGPKR 898
>BC001179-1|AAH01179.1| 1268|Homo sapiens high density lipoprotein
binding protein (vigilin) protein.
Length = 1268
Score = 39.1 bits (87), Expect = 0.021
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = -1
Query: 873 EEYLXDVADRYQPPAAPSLGDFGAVLGAENPNAPAGPGFVVKGGPW----EQRAPDTAST 706
EEYL DV D + +L + E AP+ GFVV+ PW ++APD +S+
Sbjct: 1195 EEYLADVVD------SEALQVYMKPPAHEEAKAPSR-GFVVRDAPWTASSSEKAPDMSSS 1247
Query: 705 HEFPTMPGXXXXXXXXXAWGPRR 637
EFP+ WGP+R
Sbjct: 1248 EEFPSF--GAQVAPKTLPWGPKR 1268
>AK127833-1|BAC87153.1| 847|Homo sapiens protein ( Homo sapiens
cDNA FLJ45936 fis, clone PLACE7004103, highly similar
to Vigilin. ).
Length = 847
Score = 39.1 bits (87), Expect = 0.021
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = -1
Query: 873 EEYLXDVADRYQPPAAPSLGDFGAVLGAENPNAPAGPGFVVKGGPW----EQRAPDTAST 706
EEYL DV D + +L + E AP+ GFVV+ PW ++APD +S+
Sbjct: 774 EEYLADVVD------SEALQVYMKPPAHEEAKAPSR-GFVVRDAPWTASSSEKAPDMSSS 826
Query: 705 HEFPTMPGXXXXXXXXXAWGPRR 637
EFP+ WGP+R
Sbjct: 827 EEFPSF--GAQVAPKTLPWGPKR 847
>AC104841-2|AAY14717.1| 1268|Homo sapiens unknown protein.
Length = 1268
Score = 39.1 bits (87), Expect = 0.021
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = -1
Query: 873 EEYLXDVADRYQPPAAPSLGDFGAVLGAENPNAPAGPGFVVKGGPW----EQRAPDTAST 706
EEYL DV D + +L + E AP+ GFVV+ PW ++APD +S+
Sbjct: 1195 EEYLADVVD------SEALQVYMKPPAHEEAKAPSR-GFVVRDAPWTASSSEKAPDMSSS 1247
Query: 705 HEFPTMPGXXXXXXXXXAWGPRR 637
EFP+ WGP+R
Sbjct: 1248 EEFPSF--GAQVAPKTLPWGPKR 1268
>U94703-1|AAC51321.1| 372|Homo sapiens mitochondrial DNA polymerase
accessory subunit precursor protein.
Length = 372
Score = 31.9 bits (69), Expect = 3.2
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 709 GGGVRGALFPRSTLHYKP 762
GGGV GA+FP LH+KP
Sbjct: 5 GGGVHGAVFPVDALHHKP 22
>BC099650-1|AAH99650.1| 907|Homo sapiens leucine-rich
repeat-containing G protein-coupled receptor 5 protein.
Length = 907
Score = 31.9 bits (69), Expect = 3.2
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 131 NFFSISTKSKPFYYYACLICMCKNVYKISINMNLNNN 241
NF + P+ Y C +C+N YKIS N +N
Sbjct: 464 NFPELKVIEMPYAYQCCAFGVCENAYKISNQWNKGDN 500
>BC096326-1|AAH96326.1| 883|Homo sapiens LGR5 protein protein.
Length = 883
Score = 31.9 bits (69), Expect = 3.2
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 131 NFFSISTKSKPFYYYACLICMCKNVYKISINMNLNNN 241
NF + P+ Y C +C+N YKIS N +N
Sbjct: 440 NFPELKVIEMPYAYQCCAFGVCENAYKISNQWNKGDN 476
>BC096325-1|AAH96325.1| 883|Homo sapiens LGR5 protein protein.
Length = 883
Score = 31.9 bits (69), Expect = 3.2
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 131 NFFSISTKSKPFYYYACLICMCKNVYKISINMNLNNN 241
NF + P+ Y C +C+N YKIS N +N
Sbjct: 440 NFPELKVIEMPYAYQCCAFGVCENAYKISNQWNKGDN 476
>BC096324-1|AAH96324.1| 907|Homo sapiens leucine-rich
repeat-containing G protein-coupled receptor 5 protein.
Length = 907
Score = 31.9 bits (69), Expect = 3.2
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 131 NFFSISTKSKPFYYYACLICMCKNVYKISINMNLNNN 241
NF + P+ Y C +C+N YKIS N +N
Sbjct: 464 NFPELKVIEMPYAYQCCAFGVCENAYKISNQWNKGDN 500
>AF062006-1|AAC28019.1| 907|Homo sapiens orphan G protein-coupled
receptor HG38 protein.
Length = 907
Score = 31.9 bits (69), Expect = 3.2
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 131 NFFSISTKSKPFYYYACLICMCKNVYKISINMNLNNN 241
NF + P+ Y C +C+N YKIS N +N
Sbjct: 464 NFPELKVIEMPYAYQCCAFGVCENAYKISNQWNKGDN 500
>AF061444-1|AAC77911.1| 907|Homo sapiens G protein-coupled receptor
LGR5 protein.
Length = 907
Score = 31.9 bits (69), Expect = 3.2
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 131 NFFSISTKSKPFYYYACLICMCKNVYKISINMNLNNN 241
NF + P+ Y C +C+N YKIS N +N
Sbjct: 464 NFPELKVIEMPYAYQCCAFGVCENAYKISNQWNKGDN 500
>AK097864-1|BAC05188.1| 193|Homo sapiens protein ( Homo sapiens
cDNA FLJ40545 fis, clone THYMU2001195. ).
Length = 193
Score = 31.1 bits (67), Expect = 5.5
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 634 LATRSPSGWRGLRLLSTGHGRELVSGGGVRGAL-FPRSTLHYKP 762
LA P GW +RLL R L G AL PR+T H++P
Sbjct: 74 LAVAGPQGWPAVRLLREAPLRGLGDPGARLSALEGPRATRHHRP 117
>Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen
protein.
Length = 1464
Score = 30.3 bits (65), Expect = 9.6
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +2
Query: 692 VGNS*VEAVSGARCSHGPPFTTN-PGPAGAFGFSAPS 799
+GN GAR S GPP T PG AG G PS
Sbjct: 853 IGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPS 889
>X98705-1|CAA67261.1| 1069|Homo sapiens collagen type I alpha 1
protein.
Length = 1069
Score = 30.3 bits (65), Expect = 9.6
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +2
Query: 692 VGNS*VEAVSGARCSHGPPFTTN-PGPAGAFGFSAPS 799
+GN GAR S GPP T PG AG G PS
Sbjct: 853 IGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPS 889
>K01228-1|AAA51995.1| 1040|Homo sapiens COL1A1 protein.
Length = 1040
Score = 30.3 bits (65), Expect = 9.6
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +2
Query: 692 VGNS*VEAVSGARCSHGPPFTTN-PGPAGAFGFSAPS 799
+GN GAR S GPP T PG AG G PS
Sbjct: 429 IGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPS 465
>BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha 1
protein.
Length = 1464
Score = 30.3 bits (65), Expect = 9.6
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +2
Query: 692 VGNS*VEAVSGARCSHGPPFTTN-PGPAGAFGFSAPS 799
+GN GAR S GPP T PG AG G PS
Sbjct: 853 IGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPS 889
>AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen
protein.
Length = 1461
Score = 30.3 bits (65), Expect = 9.6
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +2
Query: 692 VGNS*VEAVSGARCSHGPPFTTN-PGPAGAFGFSAPS 799
+GN GAR S GPP T PG AG G PS
Sbjct: 850 IGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPS 886
>AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain
precursor variant protein.
Length = 1467
Score = 30.3 bits (65), Expect = 9.6
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +2
Query: 692 VGNS*VEAVSGARCSHGPPFTTN-PGPAGAFGFSAPS 799
+GN GAR S GPP T PG AG G PS
Sbjct: 856 IGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPS 892
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,271,950
Number of Sequences: 237096
Number of extensions: 2423035
Number of successful extensions: 6421
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 5889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6397
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11215125244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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