Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_O12
         (852 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    26   0.51 
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    26   0.51 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   4.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   8.2  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 25.8 bits (54), Expect = 0.51
 Identities = 21/88 (23%), Positives = 36/88 (40%)
 Frame = -2

Query: 458 QIFKQYGIQGLFRGLVPTIMREMPXXXXXXXXXXGTRELLAKPGQSKDDIGFLRTMAAGA 279
           +IFK  GI GL+RG   ++   +             R +L  P ++     FL +     
Sbjct: 165 KIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTP----FLISWGIAQ 220

Query: 278 VGGLVLWTVIFPTDVIKSRVQISNKSQK 195
           V   V   V +P D ++ R+ + +   K
Sbjct: 221 VVTTVAGIVSYPFDTVRRRMMMQSGRAK 248


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 25.8 bits (54), Expect = 0.51
 Identities = 21/88 (23%), Positives = 36/88 (40%)
 Frame = -2

Query: 458 QIFKQYGIQGLFRGLVPTIMREMPXXXXXXXXXXGTRELLAKPGQSKDDIGFLRTMAAGA 279
           +IFK  GI GL+RG   ++   +             R +L  P ++     FL +     
Sbjct: 165 KIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTP----FLISWGIAQ 220

Query: 278 VGGLVLWTVIFPTDVIKSRVQISNKSQK 195
           V   V   V +P D ++ R+ + +   K
Sbjct: 221 VVTTVAGIVSYPFDTVRRRMMMQSGRAK 248


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 541 CVKSTFRVHKLLYDDHYGL 485
           CV S +   K  +DDHYG+
Sbjct: 192 CVGSAYTPLKEDHDDHYGV 210


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 617 LMHYPPLRAALHSKTCSTPVIRQTN 691
           LMH   L  +  + TCS  V +Q N
Sbjct: 504 LMHKDSLGLSTATSTCSLAVAKQQN 528


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,662
Number of Sequences: 438
Number of extensions: 5096
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)