Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_O11
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    28   1.5  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    27   2.7  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    26   6.2  

>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -1

Query: 497  AIPFTVLEIPNIKIKKPTWLQAPSAMTTFSLVLLSYFLVTGGIIY 363
            ++P +    PN+    P+    P A   F + L+  F+  GG++Y
Sbjct: 2299 SLPVSDRVFPNLGAWNPSEGPGPCASPCFYIALICQFVAVGGLLY 2343


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -1

Query: 506 GLFAIPFTVLEIPNIK--IKKPTWLQAPSAMTTFSLVLLSYFLVT 378
           G+ A+ F     PN +  ++K  +  +PS +T+F L L SY   T
Sbjct: 24  GVLALDFVAKTFPNQENQLEKRDYTYSPSGITSFPLDLQSYTYYT 68


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
            Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 642  VLNTYWPSFYTRAAFRAEVTLPYRP 716
            V NTYW S+ +     A+  +PY P
Sbjct: 1145 VRNTYWTSYNSAYVQSADAMVPYYP 1169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,044,898
Number of Sequences: 5004
Number of extensions: 62614
Number of successful extensions: 159
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)