Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_O11
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0638 + 12493520-12494053                                        111   4e-25
03_04_0162 + 17858802-17861168                                         30   2.1  
11_05_0079 + 18914668-18914753,18915123-18915338,18915829-189158...    28   8.5  

>02_02_0638 + 12493520-12494053
          Length = 177

 Score =  111 bits (268), Expect = 4e-25
 Identities = 57/143 (39%), Positives = 81/143 (56%), Gaps = 1/143 (0%)
 Frame = -1

Query: 503 LFAIPFTVLEIPNIKIKKPTWLQAPSAMTTFSLVLLSYFLVTGGIIYDVIVEPPSVGSTT 324
           L  +PF+ L  P  +++ P+ L  PS MT F+L+LL+YF V  G++YDVIVEPP +GS  
Sbjct: 32  LRVLPFSFLRPPRTRLRLPSNLALPSPMTVFALILLTYFAVVSGLVYDVIVEPPGIGSVQ 91

Query: 323 D-EHGHSRPVAFMPNRVNGQYIMEGLAXXXXXXXXXXXFIILDRTHNPTTPKLNRMXLSA 147
           D   G  RPV F+P RVNGQYI+EGL+            I+LD   +   P+  R+    
Sbjct: 92  DPATGAVRPVVFLPGRVNGQYIIEGLSSGIMFVIGGIGIILLDLAVDRNRPRSLRVSFGG 151

Query: 146 VACXWILVACXTTWRCMRMKLPG 78
                I++A       +R+K+PG
Sbjct: 152 SGVAAIVIAYAMAMLFLRIKIPG 174


>03_04_0162 + 17858802-17861168
          Length = 788

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -1

Query: 365 YDVIVEPPSVGSTTDEHGHSR-PVAFMP 285
           Y V+V+PP  G+ TD+ GH R   +F+P
Sbjct: 56  YIVLVDPPPHGAATDDDGHRRWHESFLP 83


>11_05_0079 +
           18914668-18914753,18915123-18915338,18915829-18915895,
           18916656-18916723,18916999-18917125,18918240-18918339,
           18918405-18918433,18918678-18918730,18919246-18919732
          Length = 410

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +2

Query: 473 FPKL*TVLQIALPFHYF*YKSALVTLAELKLVDVNGKINSKAGLLSSNS 619
           FP L  +  I + +    Y SALV   ELK    NGK N     +S N+
Sbjct: 353 FPVLGIMSSILISWRIKQYSSALVIPEELKNSSTNGKANVDDKAVSENT 401


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,619,715
Number of Sequences: 37544
Number of extensions: 403778
Number of successful extensions: 849
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)