Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_O09
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    27   2.7  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   3.6  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    26   4.8  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    26   4.8  
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1...    26   4.8  
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    25   6.3  
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    25   8.4  
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    25   8.4  

>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
            Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 24/129 (18%), Positives = 59/129 (45%), Gaps = 3/129 (2%)
 Frame = -2

Query: 388  VLGMNFELEESLLTQSGPVSERMEKWTEAQRKGQKIDIDVYGKPSEKQLRELEHVRSLSK 209
            + G   +L+ES+  +S  +   + +    +++   +  ++  +  E   +++E ++SLS 
Sbjct: 732  ITGETTDLQESMHHKSRMLELVVLELHTLEQQANDLKSELSSEMDELDPKDVEALKSLSG 791

Query: 208  ELQDNLHELETAVRIADVENQAMNPTAPMLDYS-EDHEFVSANRLNNCYGDEDLVDAKE- 35
            ++++  HE +  ++    E   +      L+Y    + ++  N L    G ++ +D  E 
Sbjct: 792  QIENLSHEFDAIIK----ERAHIEARKTALEYELNTNLYLRRNPLKAEIGSDNRIDESEL 847

Query: 34   -EEKRRLTK 11
               KR L K
Sbjct: 848  NSVKRSLLK 856


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -2

Query: 400 QTRAVLGMNFELEESLLTQSGPVSERMEKWTEAQRKG 290
           Q +A L  N+E E   LTQ   + E    W   + +G
Sbjct: 179 QEKASLQTNYEFELQKLTQKNSILENNNTWLSRELQG 215



 Score = 25.4 bits (53), Expect = 6.3
 Identities = 19/70 (27%), Positives = 29/70 (41%)
 Frame = -2

Query: 253  EKQLRELEHVRSLSKELQDNLHELETAVRIADVENQAMNPTAPMLDYSEDHEFVSANRLN 74
            +  LREL       KE+ DN +EL        ++N+ +N     L  + D   +  NRL 
Sbjct: 1196 DNDLRELVSYLRHEKEIMDNKYELTI------LDNRGLNQQVKSLQSTVDSLQLELNRLQ 1249

Query: 73   NCYGDEDLVD 44
            +     D  D
Sbjct: 1250 SLPVSNDQTD 1259


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
            Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 519  VLNTYWPSFYTRAAFRAEVTLPYRP 593
            V NTYW S+ +     A+  +PY P
Sbjct: 1145 VRNTYWTSYNSAYVQSADAMVPYYP 1169


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -2

Query: 67  YGDEDLVDAKEEEKRR 20
           YGDED ++ ++EE+RR
Sbjct: 764 YGDEDELEQEQEERRR 779


>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 484

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 274 DVYGKPSEKQLRELEHVRSLSKELQDNLHELE 179
           D Y  PS    R+  +++ L+K LQD+L ELE
Sbjct: 5   DAYHWPSRTPSRKGSNIK-LNKTLQDHLDELE 35


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 268 YGKPSEKQLRELEHVRSLSKELQDNLHEL 182
           +  P+E +   +EH  +L K+++D  H L
Sbjct: 589 FENPNEGEKEIVEHYETLHKKIEDKFHTL 617


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = -2

Query: 214 SKELQDNLHELETAVRIADVENQAMNPTAPMLDYSEDHEFVSANRLNNCYGDEDLVDAKE 35
           S+ L DN+  L +  R A    +  +     L  SED EF   +   + +   DL   K+
Sbjct: 60  SESLDDNISALNSLQRSASSSEKGSDEDNEKLGSSEDDEF---DDDFDTWEQVDLSPNKQ 116

Query: 34  EEKRRL 17
           E+K+ L
Sbjct: 117 EDKKDL 122


>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/35 (40%), Positives = 24/35 (68%)
 Frame = -2

Query: 253 EKQLRELEHVRSLSKELQDNLHELETAVRIADVEN 149
           +K+L+E +  R+ +KEL + +  LET VR  ++EN
Sbjct: 284 KKKLKEQQLERT-AKELTEKVAILETRVRELEMEN 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,153,143
Number of Sequences: 5004
Number of extensions: 39359
Number of successful extensions: 171
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)