Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_O09
(596 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0035 - 232656-232781,233212-233322,233419-233563,233749-23... 31 0.92
10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702... 29 2.1
03_06_0199 + 32310272-32311432 29 2.8
05_07_0101 - 27690927-27691208,27691695-27692474 29 3.7
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 28 6.5
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558... 28 6.5
08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617 27 8.6
08_02_0203 - 14231134-14231907 27 8.6
04_04_1098 + 30876785-30876835,30876846-30877171,30877396-308774... 27 8.6
01_05_0594 - 23506423-23506767,23507004-23507153,23507264-23508325 27 8.6
>05_01_0035 -
232656-232781,233212-233322,233419-233563,233749-233882,
234341-234412,234485-234548,234632-234699,234894-235129,
236857-237166,237495-238460,238752-238931,239041-239346,
239593-239727,239810-240046,240120-240308,240521-240709,
240929-241024,241117-241323,241700-241893,242979-243216
Length = 1400
Score = 30.7 bits (66), Expect = 0.92
Identities = 15/60 (25%), Positives = 31/60 (51%)
Frame = -2
Query: 247 QLRELEHVRSLSKELQDNLHELETAVRIADVENQAMNPTAPMLDYSEDHEFVSANRLNNC 68
QLR+ V+ + + L+D HE+ +++ ++ ++ + P L Y F+ N+ N C
Sbjct: 365 QLRQPNQVKKIFEFLKDGFHEVSSSLDLSFDDDSVADEKIPFLAYLA--SFLKENKYNPC 422
>10_08_0961 +
21869612-21869773,21869869-21869956,21870047-21870277,
21870371-21870538,21870808-21871001,21871151-21871234,
21871315-21871434,21871621-21871714,21871813-21871973,
21873237-21873313,21873738-21873932,21874487-21874559,
21874635-21874721,21874906-21875043,21875181-21875383,
21875469-21875631,21875861-21875992
Length = 789
Score = 29.5 bits (63), Expect = 2.1
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Frame = -2
Query: 298 RKGQKIDIDVYGKPSEKQLRELEHVRSLSKELQDNLHELETAVR-IADVENQA-----MN 137
RK +K +D Q REL V+ LS EL++++ ELE + R +A ++ Q MN
Sbjct: 189 RKHEKY-LDEIEAFKNNQSRELHEVKCLSGELEESMAELEESRRKLAVLQLQTGGGSLMN 247
Query: 136 PTAPMLDYSEDHEFVSANRLNN-CYGDEDLVDAKEEEK 26
+AP + + VS ++ ++ G DL DA EE K
Sbjct: 248 TSAP----NGVNGSVSTDKSSDKGMGWRDLKDAVEEAK 281
>03_06_0199 + 32310272-32311432
Length = 386
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/31 (51%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -1
Query: 182 RNRCP-HRRRGEPSDEPDSTHAGLLRRPRIR 93
R RCP HRR P GLLRRPR R
Sbjct: 117 RVRCPCHRRFAHPRPARRRLRQGLLRRPRQR 147
>05_07_0101 - 27690927-27691208,27691695-27692474
Length = 353
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = +1
Query: 64 RSNCSAGSRTRIRGLRSSPA-WV 129
RSNC+AG + +RG SSPA WV
Sbjct: 220 RSNCTAGLQILLRGDYSSPARWV 242
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = -2
Query: 328 ERMEKWTEAQRKGQKIDIDVYGKPSEKQLRELEHVRSLSKELQDNLHELE 179
E EK E +R+ + + +G+ E+Q RELE R +EL+ EL+
Sbjct: 72 EVKEKQLEEERQNHTLTVQRHGEELERQSRELERQR---EELERQGRELK 118
>09_04_0151 - 15154063-15154296,15155616-15155660,15155749-15155820,
15155932-15156024,15156282-15156351,15156716-15156912,
15156946-15157215,15158620-15158757,15158841-15158930,
15159041-15159247,15159987-15160154,15160300-15160503,
15160584-15160670,15160748-15160861,15161689-15161835,
15161914-15162063,15162211-15162276,15162376-15162480,
15162625-15162798,15162930-15163154,15163534-15163590,
15163858-15164019,15164234-15164302,15164391-15164471,
15164823-15164925,15165011-15165156,15165285-15165359,
15165441-15165508,15165586-15165667,15165745-15165858,
15166358-15166476,15166692-15166781,15166862-15166988
Length = 1382
Score = 27.9 bits (59), Expect = 6.5
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = -2
Query: 256 SEKQLRELE-HVRSLSKELQDNLHELETAVRIADVENQAMNPTAPMLDYSEDHEFVSANR 80
SE ++LE + SLS+E +D EL + ++E++ TA Y E + ++
Sbjct: 987 SESISKKLEASISSLSREKEDMGIELTDV--LLEMESERSTWTAKEKAYLEAKQKLNICN 1044
Query: 79 LNNCYGDEDLV 47
NNC EDL+
Sbjct: 1045 KNNCKLSEDLI 1055
>08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617
Length = 988
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = -2
Query: 166 IADVENQAMNPTAPMLDYSEDHEFVSANRLNNCYGDEDLVDAKEE 32
+ D+ ++ + + PM DY +DH + LN D L++ +E
Sbjct: 235 LRDILSEVLYTSNPMSDYQKDHFWRIKENLNQPLEDHQLINMIKE 279
>08_02_0203 - 14231134-14231907
Length = 257
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -2
Query: 265 GKPSEKQLRELEHVRSLSKELQDNLHELETAVRIADVENQAMNPTA 128
G+P LR VRS + ++D +HEL A R + ++ + P A
Sbjct: 108 GEPPSPHLRLGYFVRSQERIIEDLMHELHRARRRIAILDREVEPRA 153
>04_04_1098 +
30876785-30876835,30876846-30877171,30877396-30877418,
30877687-30879392
Length = 701
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 118 DYSEDHEFVSANRLNNCYGDEDLVDAKEEEKR 23
D DH+ + N+ YG ED +AK +EK+
Sbjct: 249 DSDSDHDDNKKKKKNSRYGSEDDSEAKYDEKK 280
>01_05_0594 - 23506423-23506767,23507004-23507153,23507264-23508325
Length = 518
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +1
Query: 52 SLRRRSNCSAGSRTRIRGLRSSPAWVXXXXXXXXPRLRCGQRFLIHANYPVA 207
SL NC + R + LR++ W+ C +R L+H PVA
Sbjct: 269 SLAMSYNCPSRLRIKSPSLRAAVEWMSSLDEIVVDGAPCLERLLLHHAIPVA 320
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,824,842
Number of Sequences: 37544
Number of extensions: 250536
Number of successful extensions: 825
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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