Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_O09
         (596 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   4.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   4.0  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   5.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.2  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
 Frame = -2

Query: 211 KELQD--NLHELETAVRIADVENQAMNPTAPMLDYSEDHEF---VSANRLNNCYGDEDLV 47
           +EL+D    +     + I+ +EN ++N   P L  SE H     +  N   +   D+D +
Sbjct: 168 EELRDLKETYPFNPVLFISSLENISLNGIDPELTESEQHRLQNRLYTNDSTSSKTDDDSI 227

Query: 46  D 44
           D
Sbjct: 228 D 228


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
 Frame = -2

Query: 211 KELQD--NLHELETAVRIADVENQAMNPTAPMLDYSEDHEF---VSANRLNNCYGDEDLV 47
           +EL+D    +     + I+ +EN ++N   P L  SE H     +  N   +   D+D +
Sbjct: 206 EELRDLKETYPFNPVLFISSLENISLNGIDPELTESEQHRLQNRLYTNDSTSSKTDDDSI 265

Query: 46  D 44
           D
Sbjct: 266 D 266


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 87  ADTNSWSSE*SSMGAVGFIAWFSTSAMRT 173
           AD  +   + + +GA GFI W S+  + T
Sbjct: 313 ADLEATLRKITDLGADGFIIWGSSDDINT 341


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 593 RPVRKCYFC 567
           +P+ KCYFC
Sbjct: 422 KPLDKCYFC 430


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 265 GKPSEKQLRELEHVRSLSK 209
           GKP+E  L ++ HV+   K
Sbjct: 410 GKPAEGMLTDVFHVQETDK 428


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,123
Number of Sequences: 438
Number of extensions: 2817
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)