Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_O08
         (847 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0561 + 34728428-34728439,34728529-34728615,34728729-347287...   136   3e-32
09_04_0154 - 15180921-15181811,15181986-15182070,15182205-15182419     36   0.041
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863...    31   0.87 
09_04_0155 - 15185985-15186755,15187049-15187236,15187479-151875...    29   3.5  
10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393     29   4.7  
09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351     28   8.1  

>03_06_0561 +
           34728428-34728439,34728529-34728615,34728729-34728750,
           34728843-34728925,34729139-34729171,34729468-34729546,
           34729642-34729694,34729931-34729991,34730168-34730250,
           34730418-34730513
          Length = 202

 Score =  136 bits (328), Expect = 3e-32
 Identities = 63/116 (54%), Positives = 79/116 (68%)
 Frame = -2

Query: 600 RRKWDKEEFXXXXXXXXXXXXXXXXXXXXXATPVKRELLKQREYKVDLDSRLGKSVVINK 421
           RRK+DKEE+                       PV+R+ LK R+Y+VDL+SRLGK+ V+  
Sbjct: 13  RRKFDKEEYLERARQREREEKEEARKGKEKGPPVQRQPLKHRDYEVDLESRLGKTQVVTP 72

Query: 420 NTPTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKIERSSLDQVKARF 253
             P SQ  GYYC VC+CVVKDS N+LDHINGKKHQR LGMSM++ER+SL+QV+ RF
Sbjct: 73  IAPLSQQAGYYCKVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQKRF 128


>09_04_0154 - 15180921-15181811,15181986-15182070,15182205-15182419
          Length = 396

 Score = 35.9 bits (79), Expect = 0.041
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -2

Query: 456 DSRLGKSVVINKNTPTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSM 295
           D    KSV I+  T   Q   Y+C VC           DH++GKKH + L + +
Sbjct: 342 DGSSSKSVKISA-TMDKQKATYFCEVCSLKCTSQRMLADHLSGKKHIKQLELQL 394



 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 387 CNVCDCVVKDSINFLDHINGKKHQRNL-GMSMKIERSSL 274
           C VC+       N  DH  G+KHQ  + G+ +K + +++
Sbjct: 104 CAVCEVQTSSERNLRDHYGGQKHQSKVAGLELKAKTATV 142


>03_02_0455 -
           8630543-8630893,8630994-8631068,8631149-8631223,
           8631332-8631397,8631891-8631967,8632659-8633070
          Length = 351

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 414 PTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQRNL 307
           P      Y C +C  +  +  N+L H  GK+HQ NL
Sbjct: 75  PLDFVSSYECKLCLTLHNNEGNYLAHTQGKRHQTNL 110


>09_04_0155 -
           15185985-15186755,15187049-15187236,15187479-15187517,
           15187741-15187768
          Length = 341

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 387 CNVCDCVVKDSINFLDHINGKKHQRN 310
           C++C+       +F  H+ GKKHQ N
Sbjct: 166 CSICNISCNGECDFDTHLKGKKHQAN 191


>10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393
          Length = 278

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 387 CNVCDCVVKDSINFLDHINGKKHQRNLGMS 298
           C +CD ++   +N   H  GK+H   L +S
Sbjct: 230 CQLCDVLLASELNVAQHYAGKQHLHRLRLS 259


>09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351
          Length = 415

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -2

Query: 426 NKNTPTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQ 316
           N +    Q+  YYC++C+           H+ GK+H+
Sbjct: 371 NSSAHHHQNRMYYCDICEVRCSSEKMMASHLAGKRHR 407


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,759,653
Number of Sequences: 37544
Number of extensions: 305192
Number of successful extensions: 648
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)