Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_O08
         (847 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L17337-4|ABM74561.1|  217|Caenorhabditis elegans Hypothetical pr...   140   1e-33
Z68297-1|CAA92593.2|  222|Caenorhabditis elegans Hypothetical pr...    33   0.26 
AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z35663-13|CAA84729.1|  234|Caenorhabditis elegans Hypothetical p...    30   2.4  
AL032654-9|CAA21720.1|  404|Caenorhabditis elegans Hypothetical ...    30   2.4  
AC006814-3|AAF60861.1|  382|Caenorhabditis elegans Hypothetical ...    30   2.4  
AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical ...    29   4.2  
Z81589-3|CAB04719.1|  256|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U41534-6|AAB47598.1|  375|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>L17337-4|ABM74561.1|  217|Caenorhabditis elegans Hypothetical
           protein ZK686.4 protein.
          Length = 217

 Score =  140 bits (339), Expect = 1e-33
 Identities = 66/124 (53%), Positives = 86/124 (69%), Gaps = 4/124 (3%)
 Frame = -2

Query: 606 DHRRKWDKEEFXXXXXXXXXXXXXXXXXXXXXATP----VKRELLKQREYKVDLDSRLGK 439
           +HRR WD++E+                            VKRE+L+ REYKVDLDS++GK
Sbjct: 15  NHRRTWDEKEYSLAAQQRLLDEKEAEDIRLGKKKKDEPKVKREMLQAREYKVDLDSKVGK 74

Query: 438 SVVINKNTPTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKIERSSLDQVKA 259
           SVVI K TP++++GG+YC+VCDCVVKDSINFLDHINGK HQRN+GMSMK ++S++  V+ 
Sbjct: 75  SVVITKATPSAETGGFYCDVCDCVVKDSINFLDHINGKNHQRNIGMSMKTKKSTVADVRE 134

Query: 258 RFAL 247
           RF L
Sbjct: 135 RFKL 138


>Z68297-1|CAA92593.2|  222|Caenorhabditis elegans Hypothetical
           protein F11A10.2 protein.
          Length = 222

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 399 GGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKIERS 280
           G Y C +C  +  +  ++L H  GKKHQ NL      E+S
Sbjct: 52  GTYECKLCLTLHNNEGSYLAHTQGKKHQANLARRAAKEQS 91


>AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical
           protein Y95B8A.7 protein.
          Length = 608

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = -2

Query: 447 LGKSVVINKNTPTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKIERSSLDQ 268
           +G+  V  +   T +   ++C +CDC   D      HI G++H+  +    KI+ + +  
Sbjct: 157 VGEEHVTEERDATGKLVQFHCKLCDCKFSDPNAKEIHIKGRRHR--VSYRQKIDPTLVVD 214

Query: 267 VK 262
           VK
Sbjct: 215 VK 216


>Z35663-13|CAA84729.1|  234|Caenorhabditis elegans Hypothetical
           protein T04A8.10 protein.
          Length = 234

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 402 SGGYYCNVCDCVVKDSINFLDHINGKKHQRNL 307
           +G   C VC+  +K  I +  H+NGKKH+ ++
Sbjct: 13  NGNIQCLVCNAEIKPKI-WTAHVNGKKHRDSI 43


>AL032654-9|CAA21720.1|  404|Caenorhabditis elegans Hypothetical
           protein Y52B11A.9 protein.
          Length = 404

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -2

Query: 393 YYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKIERSSLDQVKARFALN 244
           ++C +C    +D+  F  H+  + HQR L +  +   S L Q    F  N
Sbjct: 26  FFCQMCQKQCRDANGFKCHLTSEAHQRQLLLFAENSNSYLRQFSNDFEKN 75


>AC006814-3|AAF60861.1|  382|Caenorhabditis elegans Hypothetical
           protein Y69F12A.1 protein.
          Length = 382

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 791 LFRLCCYG*FSRVIFLIDLIDYSSL 717
           LFR CCY   S ++  +D + YSS+
Sbjct: 307 LFRKCCYEQMSAILLYLDQLSYSSI 331


>AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical
            protein ZC123.3 protein.
          Length = 1623

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 408  SQSGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKIE 286
            S+SG  +C +CD      ++  DH+  ++H   L  ++K E
Sbjct: 1412 SRSGELHCEICDKTFATRLSLQDHLFAEQHIEFLRNNLKRE 1452


>Z81589-3|CAB04719.1|  256|Caenorhabditis elegans Hypothetical
           protein T08G5.7 protein.
          Length = 256

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 423 KNTPTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQR 313
           K+  T  SG + C VC+ V+       +H+N +KH++
Sbjct: 67  KSLTTKGSGAWKCPVCELVIPTEKGLKNHMN-QKHRK 102


>U41534-6|AAB47598.1|  375|Caenorhabditis elegans Hypothetical
           protein C16A3.4 protein.
          Length = 375

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2

Query: 390 YCNVCDCVVKDSINFLDHINGKKHQRN 310
           YC  C   +K      DH+  KKH+ N
Sbjct: 72  YCKACRKSIKSENAMTDHVASKKHKEN 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,140,273
Number of Sequences: 27780
Number of extensions: 304901
Number of successful extensions: 698
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)