Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_O05
         (856 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0558 - 3968211-3969475,3970198-3970266,3970374-3970529,397...    29   6.2  
06_01_0308 + 2229025-2229260,2229448-2230145,2230377-2230469,223...    28   8.3  

>06_01_0558 -
           3968211-3969475,3970198-3970266,3970374-3970529,
           3971075-3971405
          Length = 606

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +3

Query: 18  IQKHLNWCXQNFCQXF-QVVIAVLITFFFFSQLHVSKSLFKRXKPSQNLHLSHSITLTLN 194
           + ++L+W   ++ +    + + + ITF   S L++SK+ F+   PS   HL +  TL L+
Sbjct: 366 VNQNLSWLDASYNRLSGDLPVDINITFPNLSYLNLSKNFFQGIFPSAVSHLENLSTLDLS 425


>06_01_0308 +
           2229025-2229260,2229448-2230145,2230377-2230469,
           2230815-2231992
          Length = 734

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +1

Query: 598 AGLGRLIVPVPLICNSTMVFFEINFVNYSKFKNIMNLYDKKCIYKKKTDEFK-KDTY 765
           +G+G   VP+    ++ +  F + F NY+  K ++N   +   +  + D+FK K +Y
Sbjct: 186 SGMGCCQVPI----STNLRRFSLGFYNYNTTKKVLNFSSRSYAFVVEKDQFKFKSSY 238


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,755,947
Number of Sequences: 37544
Number of extensions: 318744
Number of successful extensions: 510
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)