Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_O02
         (825 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0232 + 23794109-23794399,23795290-23796621                       35   0.068
08_02_0955 + 22994266-22995630                                         30   2.6  
01_06_1114 + 34619597-34619972,34620772-34620852,34621294-346213...    29   4.5  

>04_04_0232 + 23794109-23794399,23795290-23796621
          Length = 540

 Score = 35.1 bits (77), Expect = 0.068
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = -2

Query: 815 TCSASWSWWRSPLPPHSARVLSSQTKPLSRPRTLSLFLRMP*SRRCRRVLNSR-PTSQSL 639
           +C A  + WR+ LPP ++R L+      SR   LSL +    ++R  R+L  R P+  + 
Sbjct: 131 SCRAVCASWRAALPPPTSRPLAPVADTASRHGPLSLAVCSVHAQRWSRLLGLRQPSGLAN 190

Query: 638 ATRGSTC 618
           AT  S C
Sbjct: 191 ATGASRC 197


>08_02_0955 + 22994266-22995630
          Length = 454

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/25 (64%), Positives = 18/25 (72%)
 Frame = -2

Query: 821 SPTCSASWSWWRSPLPPHSARVLSS 747
           SP+ SAS S  RS  PPH+A VLSS
Sbjct: 35  SPSRSASPSRSRSKTPPHNAAVLSS 59


>01_06_1114 +
           34619597-34619972,34620772-34620852,34621294-34621394,
           34621958-34622045,34622192-34622457
          Length = 303

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 533 LAQFLPTWSIWLCRLLMTSEGTWSPRISYRLILWLPGIDW*AASSIPSC 679
           LA  L +  + LC+LL     ++   + Y+  + LPGI   AA  + +C
Sbjct: 76  LAGLLESKPVCLCQLLAGGASSYDISVDYKRAMALPGICGLAAPPVTAC 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,853,821
Number of Sequences: 37544
Number of extensions: 397129
Number of successful extensions: 1095
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)