Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_O01
         (360 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   3.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   4.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   4.4  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               20   7.7  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    20   7.7  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 109 SLCLTLCNSCLRMSKIYL*MIRP 41
           SL  ++  +CL   K+Y+ +IRP
Sbjct: 887 SLSASVTIACLFSPKLYIILIRP 909


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 352  LLVKKRKYYNFTLKIIKIT 296
            +L   RKY N+T++++  T
Sbjct: 1176 VLTGLRKYTNYTIQVLAFT 1194


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 352  LLVKKRKYYNFTLKIIKIT 296
            +L   RKY N+T++++  T
Sbjct: 1172 VLTGLRKYTNYTIQVLAFT 1190


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -3

Query: 40 FYILLITCLFLH 5
          F+IL+IT +FL+
Sbjct: 8  FFILVITLIFLY 19


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -3

Query: 205 IHSCLQLFDSVY 170
           +HSC Q  D +Y
Sbjct: 50  LHSCFQTMDRLY 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,342
Number of Sequences: 438
Number of extensions: 1547
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)