Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_N24
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...   206   2e-54
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...   202   4e-53
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    29   0.45 
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    27   2.4  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    27   2.4  
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ...    27   2.4  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   4.2  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    26   5.5  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   5.5  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    25   7.3  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.3  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    25   7.3  
SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyce...    25   9.7  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    25   9.7  

>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score =  206 bits (504), Expect = 2e-54
 Identities = 100/184 (54%), Positives = 134/184 (72%)
 Frame = -2

Query: 556 KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 377
           + I  ++ + IP+G++V +K+RLVTVKGPRGVLK+N + + ++++      +K   W GS
Sbjct: 3   RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKKQG-NTIKFIVWHGS 61

Query: 376 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYI 197
           +K  A +RT  S + NMI GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLGE+  
Sbjct: 62  RKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERIT 121

Query: 196 RRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSE 17
           R +K  PGVTV  S   KDE+IIEGNSLE+VS SAA I+Q   V+NKDIRKFLDG+YVSE
Sbjct: 122 RVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSE 181

Query: 16  KTTV 5
           +  +
Sbjct: 182 RGNI 185


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score =  202 bits (493), Expect = 4e-53
 Identities = 98/184 (53%), Positives = 132/184 (71%)
 Frame = -2

Query: 556 KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 377
           + I  ++ + IP G+TV +K+R VTV GPRG LK+N +H+ ++++      +K   W GS
Sbjct: 3   RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQG-NTIKFIVWHGS 61

Query: 376 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYI 197
           +K  A +R+V S + NMI GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLGE+  
Sbjct: 62  RKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERIT 121

Query: 196 RRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSE 17
           R +K  PGVTV  S   KDE+I+EGNSLE+VS SAA I+Q   V+NKDIRKFLDG+YVSE
Sbjct: 122 RVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSE 181

Query: 16  KTTV 5
           +  +
Sbjct: 182 RGNI 185


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = -2

Query: 529  KIPDGLTVHVKSRLVTV---KGP-RGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELA 362
            K+PDG+ +   SRL      K P    L   F H +VD+ +    L + E WF       
Sbjct: 1564 KVPDGIFLKT-SRLPIFEANKAPYNAYLLDFFTHGSVDMLIEQNNLKQSEIWFVLNDFSL 1622

Query: 361  AVRTVCSHVENMIKGVT 311
             + T+CS + N++  VT
Sbjct: 1623 VLATICSCLGNLLNLVT 1639


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 503 MDRKPVWDFDFLICYNLLHVWALFDTRAGKKSNSFKFPIVSRIKYV 640
           M+R P+  FDF+   N +H   LF    G K++  K   +S +K V
Sbjct: 294 MERLPIPPFDFITSLNSIHEGLLF---IGSKNSESKLINLSTLKDV 336


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = -2

Query: 160 NSPKQKDELIIEGNSLEDVSSSAALIQQS 74
           +SPK+K +L ++G  L+ +  + +LI+QS
Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQS 277


>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/36 (27%), Positives = 24/36 (66%)
 Frame = -2

Query: 115 LEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTT 8
           + D+S+SA    + T + N+++ K  +GL+++ +T+
Sbjct: 78  MSDISNSACRASKITALNNRELYKDDNGLFITVQTS 113


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +2

Query: 347 DCPHGGKLLFGSEPFLNLQETRVYHANVNSQVFEVPFENSAGPFNCHQT 493
           D P+G     GS  F+      V+H+N N+   ++  +N     N H +
Sbjct: 386 DFPYGNSYGNGSSHFIANYGGSVHHSNENTMQSDLQHQNGNNAVNHHHS 434


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 2   HNSCFLRYIKTIQELSDILILD 67
           H S  L Y KT++E++ + I+D
Sbjct: 796 HQSSLLPYFKTLKEIAHLFIID 817


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/63 (22%), Positives = 35/63 (55%)
 Frame = -2

Query: 496  SRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKG 317
            S+L  +   + ++ RN + L++  ++VN     +E W G +   +AV T  + ++++ + 
Sbjct: 1111 SKLCNLLNDKNIVVRN-QSLSLFHQLVNKYPFLLESWIGLQLVQSAVNTNTADIDDLYRL 1169

Query: 316  VTK 308
            ++K
Sbjct: 1170 LSK 1172


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 353 PHGGKLLFGSEPFLNLQETRVYHANVNSQVFEVPFENSAGP 475
           PH GK    S   +N  E+R   A+V+S   + PF    GP
Sbjct: 127 PHAGKAA-QSAHVMNSTESRPSSAHVSSSYTQKPFAFPLGP 166


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 363 ASSFLDPNHFSTFRRRGFTMRMSTAKC-LKFLLRTPRG 473
           A SFL+P   STF R  F+  +S   C +   LR+P G
Sbjct: 341 AQSFLEPQTRSTFLRYLFSDEVSVKVCHVLKELRSPTG 378


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +2

Query: 425 NVNSQVFEVPFENSAGP-FNCHQTRFHMDRKPVWDFDFLICYNLLHVWALFDTRAGKKSN 601
           ++N+++     E    P  +  + R H    P  +F +   Y   +V +  +     +  
Sbjct: 92  DMNNKIVNEGNEYDQTPDISARKRRKHFRMLPQNNFRYFQFYGTTNVISASNLTTTSEIP 151

Query: 602 SFKFPIVSRIKY 637
           +FKFPI S+ KY
Sbjct: 152 TFKFPIFSKRKY 163


>SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 176

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 17/53 (32%), Positives = 20/53 (37%)
 Frame = +2

Query: 458 ENSAGPFNCHQTRFHMDRKPVWDFDFLICYNLLHVWALFDTRAGKKSNSFKFP 616
           E S     C       D  PV + D LI  NL   WA  +T+       FK P
Sbjct: 15  EMSTLQLGCDLAALGFDLAPVEE-DRLISTNLFSPWAELNTKKPVSQPMFKLP 66


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 590 FRLLCQTKPKHEANCSKSESQNPRRA 513
           F +LC  + K +  C K + +NP  A
Sbjct: 25  FLILCMRRNKRQLACMKCQCENPMAA 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,822,467
Number of Sequences: 5004
Number of extensions: 58958
Number of successful extensions: 181
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)