Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_N23
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr ...   194   2e-50
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    28   1.4  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    26   7.7  

>SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score =  194 bits (472), Expect = 2e-50
 Identities = 100/209 (47%), Positives = 144/209 (68%), Gaps = 5/209 (2%)
 Frame = -1

Query: 697 RTMFIQTQDTPNPNSLKFLPGTKVLEPG-QTLDFPNIGAAHCSPLAKMLFRIDGVKAVFF 521
           R+++I++++TPN N+LKFLPG  +L P   + +F        SPLA+ LF IDGV ++FF
Sbjct: 41  RSIWIRSEETPNENALKFLPGLDILPPTIGSCEFMRGQGTVNSPLAQKLFDIDGVDSIFF 100

Query: 520 GPEFITVTKQDDDVDWKLLKPEIFGTIMDFFASGLPVVTDA--KPSGDTQINEDDDEIVQ 347
           G +FITV+K     +W  +KPE+F  IM+  ++G PV+++   K + DTQI E D +IV 
Sbjct: 101 GKDFITVSK-GAGTEWAQMKPEVFSVIMEHLSNGSPVLSEEPLKGASDTQILESDSQIVA 159

Query: 346 MIKELLDTRIRPTVQEDGGDVLFVDF--KDGILRLKMQGSCSSCPSSIVTLKNGVQNMMQ 173
           MIKEL++T IRP++QEDGGDV F  F  K G + LK++G+C +C SS VTLKNG+Q M++
Sbjct: 160 MIKELIETSIRPSIQEDGGDVEFRGFDEKTGTVSLKLRGACRTCSSSAVTLKNGIQQMLK 219

Query: 172 FYIPEVLAVEQIDDEGEKLSEKIFREFEQ 86
            YIPEV  V Q+ D  E+++   F +FEQ
Sbjct: 220 HYIPEVENVVQVLDPEEEVAIAEFEKFEQ 248


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -1

Query: 250 LKMQG-SCSSCPSSIVTLKNGVQNMMQFYIPEVL 152
           L +QG +C+SC +SI ++  GV+ + QF I  +L
Sbjct: 6   LSVQGMTCTSCVASIQSMLEGVEGIEQFTISLLL 39


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 232 CSSCPSSIVTLKNGVQNMMQFY 167
           C S PSS VTL NG  +    Y
Sbjct: 313 CPSTPSSAVTLSNGFDSQSNAY 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,476,371
Number of Sequences: 5004
Number of extensions: 75077
Number of successful extensions: 211
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)