Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_N23
         (844 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70686-1|CAA94609.1|  222|Caenorhabditis elegans Hypothetical pr...   252   2e-67
Z81117-1|CAB03312.1|  431|Caenorhabditis elegans Hypothetical pr...    30   2.4  
Z81587-2|CAB04702.2|  339|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AL110485-31|CAB60352.2|  280|Caenorhabditis elegans Hypothetical...    29   4.1  
AF101317-1|AAC69234.1|  330|Caenorhabditis elegans Seven tm rece...    29   4.1  
U21854-1|AAA87454.1|  310|Caenorhabditis elegans cCAF1 protein p...    29   5.5  
AL132860-28|CAB60501.1|  310|Caenorhabditis elegans Hypothetical...    29   5.5  
U88184-14|AAK31520.1|  821|Caenorhabditis elegans Hypothetical p...    28   7.2  
AF016674-4|AAB66130.1|  287|Caenorhabditis elegans Hypothetical ...    28   7.2  
Z92804-4|CAB07251.1|  335|Caenorhabditis elegans Hypothetical pr...    28   9.5  

>Z70686-1|CAA94609.1|  222|Caenorhabditis elegans Hypothetical
           protein R10H10.1 protein.
          Length = 222

 Score =  252 bits (618), Expect = 2e-67
 Identities = 119/207 (57%), Positives = 156/207 (75%), Gaps = 1/207 (0%)
 Frame = -1

Query: 697 RTMFIQTQDTPNPNSLKFLPGTKVL-EPGQTLDFPNIGAAHCSPLAKMLFRIDGVKAVFF 521
           R+M+IQ Q+TPNP SLKFLPG ++L +  +T DF +   A  SPLA  L R+DGVK VFF
Sbjct: 14  RSMYIQVQETPNPLSLKFLPGQQLLPDASKTYDFSSAATAKQSPLAIKLLRVDGVKRVFF 73

Query: 520 GPEFITVTKQDDDVDWKLLKPEIFGTIMDFFASGLPVVTDAKPSGDTQINEDDDEIVQMI 341
           G +F+TVTK D+ VDW LL+PEIF TI D   +G PV+ +A    D Q+ E+DDE+V MI
Sbjct: 74  GEDFVTVTKSDETVDWALLRPEIFSTIADHIQTGKPVINEAATVSD-QV-EEDDEVVMMI 131

Query: 340 KELLDTRIRPTVQEDGGDVLFVDFKDGILRLKMQGSCSSCPSSIVTLKNGVQNMMQFYIP 161
           KE+L+TRIRP VQEDGGD+ +V F DG+++LKMQGSC+ CPSS VTLKNG++NM+ FY+P
Sbjct: 132 KEILETRIRPMVQEDGGDITYVGFDDGVVKLKMQGSCTGCPSSGVTLKNGIENMLTFYVP 191

Query: 160 EVLAVEQIDDEGEKLSEKIFREFEQSK 80
           EV  V ++ DE + L E+  ++FEQSK
Sbjct: 192 EVKEVIEVKDESDDLVEQELKKFEQSK 218


>Z81117-1|CAB03312.1|  431|Caenorhabditis elegans Hypothetical
           protein T06E6.1 protein.
          Length = 431

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -1

Query: 418 LPVVTDAKPSGDTQINEDDDEIVQMIKELLDTRIRPTVQEDGGDVLFVDFKDGIL 254
           L ++ D KP+   +INED+ E   M K+    R      ED  DV+  D   G++
Sbjct: 308 LSILNDKKPASKKEINEDETEYGNMTKD--GYRSENEDDEDDDDVIEEDDVWGVM 360


>Z81587-2|CAB04702.2|  339|Caenorhabditis elegans Hypothetical
           protein T06G6.2 protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +1

Query: 694 YGSMQKELDSFVECQTLKYLIVHGTFLSAFVKLMRIVHGCTVYY 825
           Y       D  + C T KY + H  ++S F+  ++++     YY
Sbjct: 125 YSVFSLAFDRLISCYTPKYYLSHQYYVSIFLLFIQLIFTLGTYY 168


>AL110485-31|CAB60352.2|  280|Caenorhabditis elegans Hypothetical
           protein Y46G5A.7 protein.
          Length = 280

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/52 (25%), Positives = 29/52 (55%)
 Frame = -1

Query: 232 CSSCPSSIVTLKNGVQNMMQFYIPEVLAVEQIDDEGEKLSEKIFREFEQSKA 77
           C +   S +  +  ++ ++ F + + ++V  +  EG+ +S K+FR   +SKA
Sbjct: 108 CINIDISDLYNEGDIKRLVAFIVRKKISVNNLKFEGKNISNKLFRGLFKSKA 159


>AF101317-1|AAC69234.1|  330|Caenorhabditis elegans Seven tm
           receptor protein 16 protein.
          Length = 330

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
 Frame = +2

Query: 122 FAFIVYLFDSQNFWYVKLHHILYPIF*SYNRAWTRRARSLHL*PQDSIFKINKQYIATIF 301
           + +++ LF      +     +LYP+  SYN  +     S  L   + + KI    +    
Sbjct: 41  YKYLIILFSVFGIAFASFEFVLYPVLHSYNSGYIFFTSSRPLNASNEVMKI--MLVLYTA 98

Query: 302 LYSRT-NPCV*QFFYHLNYFIIIFVY 376
           +YS T +    QF Y   YF I   Y
Sbjct: 99  MYSTTISLLAVQFLY--RYFAIFHEY 122


>U21854-1|AAA87454.1|  310|Caenorhabditis elegans cCAF1 protein
           protein.
          Length = 310

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 29/110 (26%), Positives = 41/110 (37%), Gaps = 6/110 (5%)
 Frame = -1

Query: 757 LSGILKSDIPQKSPALFACFRTMFIQTQD------TPNPNSLKFLPGTKVLEPGQTLDFP 596
           L  I   D+P++    F C +T+F  + D      TPN  S K   G +  E    LD  
Sbjct: 177 LKSITLGDLPKEESTFFMCHKTLFPTSFDIKILLRTPNCASAKLKGGLQ--EVADQLDVK 234

Query: 595 NIGAAHCSPLAKMLFRIDGVKAVFFGPEFITVTKQDDDVDWKLLKPEIFG 446
             G  H +          G  A+     F  + KQ    +W  + P I G
Sbjct: 235 RQGVRHQA----------GSDALLTAATFFKIKKQFFGDNWNQIAPLICG 274


>AL132860-28|CAB60501.1|  310|Caenorhabditis elegans Hypothetical
           protein Y56A3A.20 protein.
          Length = 310

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 29/110 (26%), Positives = 41/110 (37%), Gaps = 6/110 (5%)
 Frame = -1

Query: 757 LSGILKSDIPQKSPALFACFRTMFIQTQD------TPNPNSLKFLPGTKVLEPGQTLDFP 596
           L  I   D+P++    F C +T+F  + D      TPN  S K   G +  E    LD  
Sbjct: 177 LKSITLGDLPKEESTFFMCHKTLFPTSFDIKILLRTPNCASAKLKGGLQ--EVADQLDVK 234

Query: 595 NIGAAHCSPLAKMLFRIDGVKAVFFGPEFITVTKQDDDVDWKLLKPEIFG 446
             G  H +          G  A+     F  + KQ    +W  + P I G
Sbjct: 235 RQGVRHQA----------GSDALLTAATFFKIKKQFFGDNWNQIAPLICG 274


>U88184-14|AAK31520.1|  821|Caenorhabditis elegans Hypothetical
           protein F36H5.1 protein.
          Length = 821

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -3

Query: 233 VLFLSKLYCNFKKWGTEYDAVLHTRSF--GCRTN 138
           +L + +  C +  W TE DAV H RSF   C+ N
Sbjct: 399 ILSIIEEACFWPYWITEEDAVFHERSFYISCKVN 432


>AF016674-4|AAB66130.1|  287|Caenorhabditis elegans Hypothetical
           protein C03H5.3 protein.
          Length = 287

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = -1

Query: 265 DGILRLKMQGSCSSCPSSIVTLKNGVQNMMQ 173
           DG+ ++KM+ S      ++VTLK GVQN+++
Sbjct: 224 DGVFQVKMKKS--KAKFNVVTLKAGVQNILE 252


>Z92804-4|CAB07251.1|  335|Caenorhabditis elegans Hypothetical
           protein K05D4.6 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 732 MSDFKIPDSPWYFLVCLCKVDANSTRLH 815
           M DF   + P+YF +CL  V A S  LH
Sbjct: 1   MVDFSFLNEPYYFSMCLYVVGALSFPLH 28


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,296,297
Number of Sequences: 27780
Number of extensions: 424279
Number of successful extensions: 1161
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)